The bio-molecular research community in the Los Angeles area is requesting NIH funding to purchase a state-of-art pulse electron paramagnetic resonance (EPR) spectrometer, the EleXsys FT-EPR system from Bruker Corporation. Pulse EPR spectroscopy is a powerful tool for analyzing conformations and metal ion cofactors of biological systems. The proposed pulse EPR spectrometer simultaneously will provide two capabilities that are central to the participating users. One is Double Electron Electron Resonance (DEER) spectroscopy, which selectively measures electron spin dipolar interactions to yield inter-spin distances up to 80 ? in bio-molecules. The measured distances provide direct structural constraints for mapping global structures and monitoring conformational changes of complex bio-molecular systems. User projects that require DEER span many important public health related areas, including viral replication and infection (X. Chen, Goodman, Qin), protein trafficking (Shan), transcription regulation (L. Chen), and human chromosomal translocation (Lieber). The second type of pulse EPR measurement is Electron Nuclear Double Resonance (ENDOR) and Electron Spin Echo Envelope Modulation (ESEEM), which measure interactions between the electron spin and the surrounding nuclei. This will be used to study ligand identity and coordination geometry of metal co-factors in nitrogenase (Rees, McKenna), DNA polymerase (McKenna, Crans, Goodman), and amoyloid formation in Alzheimer's disease (Zhou). Pulse EPR capabilities are grossly inadequate at the participating institutions. Funding of the proposed instrument will significantly benefit on-going research in the group of users, which are currently supported by 23 NIH grants. It will also support the broader regional research community, training of minorities, and educational missions. The award will immediately impact approximately 500 jobs in American, thus stimulating the economy.

Agency
National Institute of Health (NIH)
Institute
National Center for Research Resources (NCRR)
Type
Biomedical Research Support Shared Instrumentation Grants (S10)
Project #
1S10RR028992-01
Application #
7840304
Study Section
Special Emphasis Panel (ZRG1-IMST-B (32))
Program Officer
Levy, Abraham
Project Start
2009-12-07
Project End
2011-12-06
Budget Start
2009-12-07
Budget End
2011-12-06
Support Year
1
Fiscal Year
2010
Total Cost
$1,039,916
Indirect Cost
Name
University of Southern California
Department
Chemistry
Type
Schools of Arts and Sciences
DUNS #
072933393
City
Los Angeles
State
CA
Country
United States
Zip Code
90089
Tangprasertchai, Narin S; Di Felice, Rosa; Zhang, Xiaojun et al. (2017) CRISPR-Cas9 Mediated DNA Unwinding Detected Using Site-Directed Spin Labeling. ACS Chem Biol 12:1489-1493
Eschmann, Neil A; Georgieva, Elka R; Ganguly, Pritam et al. (2017) Signature of an aggregation-prone conformation of tau. Sci Rep 7:44739
Vazquez Reyes, Carolina; Tangprasertchai, Narin S; Yogesha, S D et al. (2017) Nucleic Acid-Dependent Conformational Changes in CRISPR-Cas9 Revealed by Site-Directed Spin Labeling. Cell Biochem Biophys 75:203-210
Xu, Cui-Xia; Zhang, Xiaojun; Zhou, Yi-Wei et al. (2016) A Nitroxide-Tagged Platinum(II) Complex Enables the Identification of DNA G-Quadruplex Binding Mode. Chemistry 22:3405-3413
Zhang, Xiaojun; Xu, Cui-Xia; Di Felice, Rosa et al. (2016) Conformations of Human Telomeric G-Quadruplex Studied Using a Nucleotide-Independent Nitroxide Label. Biochemistry 55:360-72
Akiel, Rana D; Zhang, Xiaojun; Abeywardana, Chathuranga et al. (2016) Investigating Functional DNA Grafted on Nanodiamond Surface Using Site-Directed Spin Labeling and Electron Paramagnetic Resonance Spectroscopy. J Phys Chem B 120:4003-8
Tangprasertchai, Narin S; Zhang, Xiaojun; Ding, Yuan et al. (2015) An Integrated Spin-Labeling/Computational-Modeling Approach for Mapping Global Structures of Nucleic Acids. Methods Enzymol 564:427-53
Culver, Sean P; Stepanov, Viktor; Mecklenburg, Matthew et al. (2014) Low temperature synthesis and characterization of lanthanide-doped BaTiO3 nanocrystals. Chem Commun (Camb) 50:3480-3
Zhang, Xiaojun; Dantas Machado, Ana Carolina; Ding, Yuan et al. (2014) Conformations of p53 response elements in solution deduced using site-directed spin labeling and Monte Carlo sampling. Nucleic Acids Res 42:2789-97
Chen, Yongheng; Zhang, Xiaojun; Dantas Machado, Ana Carolina et al. (2013) Structure of p53 binding to the BAX response element reveals DNA unwinding and compression to accommodate base-pair insertion. Nucleic Acids Res 41:8368-76

Showing the most recent 10 out of 11 publications