TheGenomicSciencesTrainingProgram(GSTP)isbuildingthenewgenerationofgenomicscientists withstrengthsspanningacrossmultipledisciplines.Thetrainingopportunitiesandenvironmentwe proposewillenableourtraineestocreateandapplynewtools,derivedfromtechnologicaladvances thatareinformedbycutting-edgestatisticalandcomputationalapproachesthatfunctionalizediverse andlargedatasets.Thenewgenomicapproachestobiologicalandmedicalinvestigationdemand scientistswhoareknowledgeableandskilledacrossseveralfieldsineffectivewaysthatpotentiatenew insightsorinventions.Accordingly,theemergenceofnewtoolsallowingforthecreationand interpretationoflarge-scaleexperimentaleffortsiswhatGSTPhasfocusedonbythedidactical interweavingofinvestigativeapproachesdrawnfrommultiplefields(biology,genetics,physical sciences,engineering,computerscience,andstatistics)thatwereindividuallycontouredfor complementingatrainee?scoredisciplinaryfocus,yetbuiltuponachievementandknowledgewithinthe genomicsciences.GiventheincrediblyrichscientificandengineeringbreadthoftheUniversityof Wisconsin,GSTPhasbeenabletorecruitoutstandingtraineeswhogreatlyadvancedmass spectroscopy,?omic?-integration,computation,artificialtranscriptionfactors,andbio-devices,while exploringnewapplicationsleveragingtheseadvantagesforcutting-edgeinvestigationintoproteomics, transcription,metabolomics,andgenomebiology.Theseachievementsandcontributionshave nucleatedandgrownasignificantgenomicscommunity.Thisgenomicscommunityhasbecomea gatewayandcentralhubforgroundbreakingcollaborationsreachingacrossdepartments,centers, schoolsandothertrainingprograms.Weproposefortheupcomingprojectperiodthatwecontinuethis focus,withaddedemphasisoninnovation/inventionandfosteringofclinicalapplications,whichwill advancePrecisionMedicine.Werequestfundingfor10predoctoraland4postdoctoraltraineeshipsper year.Inthenextfundingperiodwewillcontinuetorecruitandtraintraineeswhohaverecently completedtheirundergraduateorgraduatedegrees.

Public Health Relevance

Modernmedicalpracticeisnowrelyingonthefruitsofgenomicresearchforanalyzing thegeneticmakeupofpatientsandtheircancers.Newmedicaltreatmentsare increasinglybeingtailoredtoindividualpatientsforincreasingtheireffectivenessand lesseningside-effects.Weproposetotrainscientistswhowillbedevelopingthesystems andanalysisthatwillenablegreateruseofgenomicinformationforbiomedical researchersandthegeneralpublicwhentheyseeadoctor.

Agency
National Institute of Health (NIH)
Institute
National Human Genome Research Institute (NHGRI)
Type
Institutional National Research Service Award (T32)
Project #
5T32HG002760-18
Application #
9951084
Study Section
National Human Genome Research Institute Initial Review Group (GNOM)
Program Officer
Colley, Heather
Project Start
2003-07-01
Project End
2023-06-30
Budget Start
2020-07-01
Budget End
2021-06-30
Support Year
18
Fiscal Year
2020
Total Cost
Indirect Cost
Name
University of Wisconsin Madison
Department
Miscellaneous
Type
Graduate Schools
DUNS #
161202122
City
Madison
State
WI
Country
United States
Zip Code
53715
Bhimsaria, Devesh; Rodríguez-Martínez, José A; Pan, Junkun et al. (2018) Specificity landscapes unmask submaximal binding site preferences of transcription factors. Proc Natl Acad Sci U S A 115:E10586-E10595
Köksal, Ali Sinan; Beck, Kirsten; Cronin, Dylan R et al. (2018) Synthesizing Signaling Pathways from Temporal Phosphoproteomic Data. Cell Rep 24:3607-3618
Millikin, Robert J; Solntsev, Stefan K; Shortreed, Michael R et al. (2018) Ultrafast Peptide Label-Free Quantification with FlashLFQ. J Proteome Res 17:386-391
Dapper, Amy L; Payseur, Bret A (2018) Effects of Demographic History on the Detection of Recombination Hotspots from Linkage Disequilibrium. Mol Biol Evol 35:335-353
Shen, Xing-Xing; Opulente, Dana A; Kominek, Jacek et al. (2018) Tempo and Mode of Genome Evolution in the Budding Yeast Subphylum. Cell 175:1533-1545.e20
Piscopo, Nicole J; Mueller, Katherine P; Das, Amritava et al. (2018) Bioengineering Solutions for Manufacturing Challenges in CAR T Cells. Biotechnol J 13:
Clark, Ryan L; McGinley, Laura L; Purdy, Hugh M et al. (2018) Light-optimized growth of cyanobacterial cultures: Growth phases and productivity of biomass and secreted molecules in light-limited batch growth. Metab Eng 47:230-242
Waters, Elizabeth A; Shusta, Eric V (2018) The variable lymphocyte receptor as an antibody alternative. Curr Opin Biotechnol 52:74-79
Stallcop, Loren E; Álvarez-García, Yasmín R; Reyes-Ramos, Ana M et al. (2018) Razor-printed sticker microdevices for cell-based applications. Lab Chip 18:451-462
Yin, John; Redovich, Jacob (2018) Kinetic Modeling of Virus Growth in Cells. Microbiol Mol Biol Rev 82:

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