Abstract

Core C will store the libraries, and any individual constructs built for this consortium, as bacterial glycerol stocks. Furthermore, the goal of our consortium is to make this technology as """"""""open source"""""""" as possible, and therefore this Core will handle all external requests for shRNAmir libraries or individual constructs. LIAI has an RNAi Center with an excellent infrastructure already in place for large scale library handling, storing, and disseminating. Core C has 3 roles: 1. Storage of the thousands of shRNAmir constructs. 2. Dissemination of libraries through the U19 groups, as bacterial clone replicates. 3. Dissemination of libraries and constructs throughout the NIH IMVC.

Public Health Relevance

When library construction is completed by Core B, with validated sequencing, bacterial colonies will be provided to Core C for (1) re-arraying, (2) Replica plating, (3) cataloguing the constructs in a database connected to the LIAI iLab server, and (4) storage at -80 C in a dedicated freezer.

  Funding Agency

Agency
National Institute of Health (NIH)
Institute
National Institute of Allergy and Infectious Diseases (NIAID)
Type
Research Program--Cooperative Agreements (U19)
Project #
1U19AI109976-01
Application #
8711629
Study Section
Special Emphasis Panel (ZAI1-ZL-I (J1))
Project Start
Project End
Budget Start
2014-03-01
Budget End
2015-02-28
Support Year
1
Fiscal Year
2014
Total Cost
$37,749
Indirect Cost
$6,090

  Institution

Name
La Jolla Institute
Department
Type
DUNS #
603880287
City
La Jolla
State
CA
Country
United States
Zip Code
92037

  Publications

Milner, J Justin; Goldrath, Ananda W (2018) Transcriptional programming of tissue-resident memory CD8+ T cells. Curr Opin Immunol 51:162-169
Wang, Dapeng; Diao, Huitian; Getzler, Adam J et al. (2018) The Transcription Factor Runx3 Establishes Chromatin Accessibility of cis-Regulatory Landscapes that Drive Memory Cytotoxic T Lymphocyte Formation. Immunity 48:659-674.e6
Milner, J Justin; Toma, Clara; Yu, Bingfei et al. (2017) Runx3 programs CD8+ T cell residency in non-lymphoid tissues and tumours. Nature 552:253-257
Yu, Bingfei; Zhang, Kai; Milner, J Justin et al. (2017) Epigenetic landscapes reveal transcription factors that regulate CD8+ T cell differentiation. Nat Immunol 18:573-582
Pedros, Christophe; Zhang, Yaoyang; Hu, Joyce K et al. (2016) A TRAF-like motif of the inducible costimulator ICOS controls development of germinal center TFH cells via the kinase TBK1. Nat Immunol 17:825-33
Martinez, Gustavo J; Hu, Joyce K; Pereira, Renata M et al. (2016) Cutting Edge: NFAT Transcription Factors Promote the Generation of Follicular Helper T Cells in Response to Acute Viral Infection. J Immunol 196:2015-9
Shaw, Laura A; Bélanger, Simon; Omilusik, Kyla D et al. (2016) Id2 reinforces TH1 differentiation and inhibits E2A to repress TFH differentiation. Nat Immunol 17:834-43
Martinez, Gustavo J; Pereira, Renata M; Äijö, Tarmo et al. (2015) The transcription factor NFAT promotes exhaustion of activated CD8? T cells. Immunity 42:265-278
Choi, Youn Soo; Gullicksrud, Jodi A; Xing, Shaojun et al. (2015) LEF-1 and TCF-1 orchestrate T(FH) differentiation by regulating differentiation circuits upstream of the transcriptional repressor Bcl6. Nat Immunol 16:980-90
Crotty, Shane; Pipkin, Matthew E (2015) In vivo RNAi screens: concepts and applications. Trends Immunol 36:315-22

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