A primary challenge in performing human immunology studies is the procurement of relevant patient samples. Accordingly, to obtain samples that are sterile, viable, and in sufficient quantity and quality is a significant task. Our Program proposal is especially ambitious as it focuses on comparison of two different diseases (DENV and MTB), different disease or exposure states, and to ensure the generality of results, enrolls individuals from several, very different, geographical locations. To address these challenges, our Clinical Core will use well- developed and validated methods to procure PBMC from sufficiently powered cohorts associated with natural infection, current disease, and vaccination to both DENV and MTB and employs our best and most experienced collaborators and clinicians with whom we have enjoyed fruitful relationships over the last 6 years. The Clinical Core will provide a centralized resource for accrual of human PBMC and sera/plasma samples, and ensure the quality and uniformity of handling of the samples received. These functions are crucial to provide a strong foundation for the studies described in the three proposed projects. The Clinical Core will work closely with the Administrative Core, the individual Projects, and the various clinical subcontractors to enable success of all objectives in this program proposal. This Core will be specifically responsible for the preparation and maintenance of IRB protocols, oversight of subject recruitment, quality control of anonymized clinical information and donor samples, and HLA typing of donor samples.

Agency
National Institute of Health (NIH)
Institute
National Institute of Allergy and Infectious Diseases (NIAID)
Type
Research Program--Cooperative Agreements (U19)
Project #
5U19AI118626-03
Application #
9284400
Study Section
Special Emphasis Panel (ZAI1-LGR-I)
Project Start
Project End
Budget Start
2017-06-01
Budget End
2018-05-31
Support Year
3
Fiscal Year
2017
Total Cost
$194,149
Indirect Cost
$84,461
Name
La Jolla Institute
Department
Type
Research Institutes
DUNS #
603880287
City
La Jolla
State
CA
Country
United States
Zip Code
92037
Patil, Veena S; Madrigal, Ariel; Schmiedel, Benjamin J et al. (2018) Precursors of human CD4+ cytotoxic T lymphocytes identified by single-cell transcriptome analysis. Sci Immunol 3:
Schulten, Véronique; Tripple, Victoria; Seumois, Grégory et al. (2018) Allergen-specific immunotherapy modulates the balance of circulating Tfh and Tfr cells. J Allergy Clin Immunol 141:775-777.e6
Burel, Julie G; Lindestam Arlehamn, Cecilia S; Khan, Nabeela et al. (2018) Transcriptomic Analysis of CD4+ T Cells Reveals Novel Immune Signatures of Latent Tuberculosis. J Immunol 200:3283-3290
Tian, Yuan; da Silva Antunes, Ricardo; Sidney, John et al. (2018) A Review on T Cell Epitopes Identified Using Prediction and Cell-Mediated Immune Models for Mycobacterium tuberculosis and Bordetella pertussis. Front Immunol 9:2778
Grifoni, Alba; Costa-Ramos, Priscilla; Pham, John et al. (2018) Cutting Edge: Transcriptional Profiling Reveals Multifunctional and Cytotoxic Antiviral Responses of Zika Virus-Specific CD8+ T Cells. J Immunol 201:3487-3491
Kong, Xiao-Fei; Martinez-Barricarte, Ruben; Kennedy, James et al. (2018) Disruption of an antimycobacterial circuit between dendritic and helper T cells in human SPPL2a deficiency. Nat Immunol 19:973-985
Lee, Alexandra J; Chang, Ivan; Burel, Julie G et al. (2018) DAFi: A directed recursive data filtering and clustering approach for improving and interpreting data clustering identification of cell populations from polychromatic flow cytometry data. Cytometry A 93:597-610
Youhanna Jankeel, Diana; Cayford, Justin; Schmiedel, Benjamin Joachim et al. (2018) An Integrated and Semiautomated Microscaled Approach to Profile Cis-Regulatory Elements by Histone Modification ChIP-Seq for Large-Scale Epigenetic Studies. Methods Mol Biol 1799:303-326
Dhanda, Sandeep Kumar; Karosiene, Edita; Edwards, Lindy et al. (2018) Predicting HLA CD4 Immunogenicity in Human Populations. Front Immunol 9:1369
Scriba, Thomas J; Carpenter, Chelsea; Pro, Sebastian Carrasco et al. (2017) Differential Recognition of Mycobacterium tuberculosis-Specific Epitopes as a Function of Tuberculosis Disease History. Am J Respir Crit Care Med 196:772-781

Showing the most recent 10 out of 21 publications