We outline plans for the next generation NIDDK Information Network (dkNET), a centralized portal for discovery and information about research resources-data, reagents, organisms, tools available to researchers through NIDDK-supported centers and other relevant projects. In this phase, we will continue to support and maintain aggregated data from biomedical databases. But since the launch of dkNET in 2012, the data and resource landscape has changed, there are new concerns about rigor and reproducibility, and we are seeing data mandates and increased demand for data and data services. We will therefore capitalize upon our considerable success in developing and deploying Research Resource Identifiers (RRIDs), a system for identifying, tracking and aggregating data about research resources in the literature currently used in over 350 journals. RRIDs are unique identifiers assigned to individual research resources and form the basis of a citation and tracking system for use within the scientific literature. Through RRIDs, we will further develop our Resource Information Network, including analytics tools, to help researchers not only to identify appropriate resources, but to provide them with up to date information about the use and performance of these resources. We will also develop services in support of NIH's new rigor and reproducibility guidelines to help researchers develop plans to identify and validate research resources and help support centers in tracking use of their products. In response to user feedback and new NIH mandates and recommendations for data management and sharing, we will also add new services and tools in support of data science. During this past phase, the PI's helped develop the FAIR principles, recommendations for making data Findable, Accessible, Interoperable and Reusable. Major data initiatives in both the US and Europe are now supporting FAIR. Full implementation of FAIR requires that the community have a way to develop and disseminate best practices and standards for metadata, data formats, etc. NIDDK is uniquely poised to help coordinate and accelerate this process for NIDDK supported researchers. We believe to gain support for proper data management and data publishing, it is important not just to provide help in compliance, but to provide tools and services for integrating and analyzing FAIR data to address critical questions. In conjunction with the Signaling Pathways Project (SPP, formerly the Nuclear Receptor Signaling Atlas, or NURSA), we will develop a new meta-analysis platform for FAIR `omics data. Through the application of biocuration and consensomic analysis of NIDDK-funded and relevant `omics data assets, dkNET users will have access to a user-friendly but powerful platform for modeling signaling events in metabolic organs and intersections between cellular signaling pathways and metabolic disease. These capabilities will be accompanied by an aggressive and extensive outreach and dissemination plan to help broaden awareness of and use of dkNET and NIDDK-supported centers.

Public Health Relevance

In order to assist in navigating the growing resource information landscape we will build on the foundation provided by dkNET to provide tools and services to researchers, clinicians, funders, and publishers in support of NIH's new rigor and reproducibility guidelines and of the FAIR principles for data resources.

Agency
National Institute of Health (NIH)
Institute
National Institute of Diabetes and Digestive and Kidney Diseases (NIDDK)
Type
Resource-Related Research Projects--Cooperative Agreements (U24)
Project #
2U24DK097771-06
Application #
9592973
Study Section
Special Emphasis Panel (ZDK1)
Program Officer
Wang, Xujing
Project Start
2012-12-01
Project End
2023-06-30
Budget Start
2018-07-01
Budget End
2019-06-30
Support Year
6
Fiscal Year
2018
Total Cost
Indirect Cost
Name
University of California, San Diego
Department
Type
Schools of Medicine
DUNS #
804355790
City
La Jolla
State
CA
Country
United States
Zip Code
92093
McMurry, Julie A; Juty, Nick; Blomberg, Niklas et al. (2017) Identifiers for the 21st century: How to design, provision, and reuse persistent identifiers to maximize utility and impact of life science data. PLoS Biol 15:e2001414
Bandrowski, Anita; Brush, Matthew; Grethe, Jeffery S et al. (2016) The Resource Identification Initiative: A Cultural Shift in Publishing. J Comp Neurol 524:8-22
Bandrowski, Anita; Brush, Matthew; Grethe, Jeffery S et al. (2016) The Resource Identification Initiative: a cultural shift in publishing. Brain Behav 6:e00417
Ozyurt, Ibrahim Burak; Grethe, Jeffrey S; Martone, Maryann E et al. (2016) Resource Disambiguator for the Web: Extracting Biomedical Resources and Their Citations from the Scientific Literature. PLoS One 11:e0146300
Bandrowski, Anita; Brush, Matthew; Grethe, Jeffery S et al. (2016) The Resource Identification Initiative: A Cultural Shift in Publishing. Neuroinformatics 14:169-82
Wilkinson, Mark D; Dumontier, Michel; Aalbersberg, I Jsbrand Jan et al. (2016) The FAIR Guiding Principles for scientific data management and stewardship. Sci Data 3:160018
Vita, Randi; Vasilevsky, Nicole; Bandrowski, Anita et al. (2016) Reproducibility and conflicts in immune epitope data. Immunology 147:349-54
Bandrowski, Anita; Brush, Matthew; Grethe, Jeffery S et al. (2015) The Resource Identification Initiative: A cultural shift in publishing. F1000Res 4:134
Whetzel, Patricia L; Grethe, Jeffrey S; Banks, Davis E et al. (2015) The NIDDK Information Network: A Community Portal for Finding Data, Materials, and Tools for Researchers Studying Diabetes, Digestive, and Kidney Diseases. PLoS One 10:e0136206
Sharma, Kumar (2014) Tell-tale signs of perturbed podocytes. J Am Soc Nephrol 25:1367-9