We propose to improve our understanding of the important determinants of dengue and polio epidemiology and immunology by splitting each problem into manageable units. By conducting a comprehensive comparison of multiple alternative hypotheses on long-term, spatially replicated, serotype-specific and age-specific data from different countries, we will pin down the nature and duration of immunity, the epidemiological impact of repeat infections, the role played by sub-clinical immune boosting, and the respective contributions of population demography, seasonality, and the structure of the human contact network. A key additional phase for polio research will aim to address the vaccine-related aspects of the problem by focusing on time periods with known vaccine usage (oral or inactivated polio vaccine) and immunization coverage. Ultimately, our findings will generate transmission models that are empirically validated for answering urgent policy needs for both dengue and polio. This work will rely heavily on the use of mathematical models of transmission and statistical methods for extracting information from high-dimensional data, encompassing space, age, serotype or climatic drivers. A major ingredient in this project, therefore, is the development, use, and dissemination of novel methodological tools that will be implemented in open-source public software. Finally, we will bring together the intellectual fruits of this effort to develop optimal, cost-effective immunization policy

Public Health Relevance

Effective immunization strategies are critical for public health. Disentangling the complex interaction of factors that affect the epidemiology, immunology, evolution, and control is an urgent priority. Using extensive databases of dengue and polio incidence, we will test competing hypotheses using cutting-edge statistical methods and use the result to develop optimal, cost-effective immunization policies.

Agency
National Institute of Health (NIH)
Institute
National Institute of General Medical Sciences (NIGMS)
Type
Specialized Center--Cooperative Agreements (U54)
Project #
1U54GM111274-01
Application #
8796464
Study Section
Special Emphasis Panel (ZGM1-BBCB-5 (MI))
Project Start
Project End
Budget Start
2014-09-12
Budget End
2015-06-30
Support Year
1
Fiscal Year
2014
Total Cost
$299,461
Indirect Cost
$19,000
Name
Fred Hutchinson Cancer Research Center
Department
Type
DUNS #
078200995
City
Seattle
State
WA
Country
United States
Zip Code
98109
Claywell, Brian C; Dinh, Vu; Fourment, Mathieu et al. (2018) A Surrogate Function for One-Dimensional Phylogenetic Likelihoods. Mol Biol Evol 35:242-246
Sun, Kaiyuan; Zhang, Qian; Pastore-Piontti, Ana et al. (2018) Quantifying the risk of local Zika virus transmission in the contiguous US during the 2015-2016 ZIKV epidemic. BMC Med 16:195
Antia, Alice; Ahmed, Hasan; Handel, Andreas et al. (2018) Heterogeneity and longevity of antibody memory to viruses and vaccines. PLoS Biol 16:e2006601
Fourment, Mathieu; Claywell, Brian C; Dinh, Vu et al. (2018) Effective Online Bayesian Phylogenetics via Sequential Monte Carlo with Guided Proposals. Syst Biol 67:490-502
Zarnitsyna, Veronika I; Bulusheva, Irina; Handel, Andreas et al. (2018) Intermediate levels of vaccination coverage may minimize seasonal influenza outbreaks. PLoS One 13:e0199674
Ben-Shachar, Rotem; Koelle, Katia (2018) Transmission-clearance trade-offs indicate that dengue virulence evolution depends on epidemiological context. Nat Commun 9:2355
Dinh, Vu; Darling, Aaron E; Matsen Iv, Frederick A (2018) Online Bayesian Phylogenetic Inference: Theoretical Foundations via Sequential Monte Carlo. Syst Biol 67:503-517
Bisanzio, Donal; Dzul-Manzanilla, Felipe; Gomez-Dantés, Hector et al. (2018) Spatio-temporal coherence of dengue, chikungunya and Zika outbreaks in Merida, Mexico. PLoS Negl Trop Dis 12:e0006298
Tsang, Tim K; Chen, Tian-Mu; Longini Jr, Ira M et al. (2018) Transmissibility of Norovirus in Urban Versus Rural Households in a Large Community Outbreak in China. Epidemiology 29:675-683
Pavía-Ruz, Norma; Barrera-Fuentes, Gloria Abigail; Villanueva-Jorge, Salha et al. (2018) Dengue seroprevalence in a cohort of schoolchildren and their siblings in Yucatan, Mexico (2015-2016). PLoS Negl Trop Dis 12:e0006748

Showing the most recent 10 out of 134 publications