C. HTS Core The objective of the HTS Core is to perform accurate, cost-effective, high-throughput screening with a broad spectrum of screening modalities. While the screening capabilities that we have used during the past 10 years have been robust and productive, we have undertaken a significant modification to enhance and to expand these capabilities, including robotic screening in a BL2 and BL2+ environment. We have designed and are now validating and implementing a fully automated and integrated, modular screening and compound management system (Figure 5). This system contains five modules that include: long-term compound store;compoundmanagement module;HTS/high-content general screening module;HTS/high-content BL2+ module for virusrelated projects;HTS/high-content BL2 module for bacteria- and/or yeast-related projects. This system has been built by High Resolution Engineering, Inc. and was co-designed with our Assay Development, HTS and Informatics core groups based upon specifications from a diverse set of validated assays currently being run at the Broad Institute. The system will be fully implemented by April 2008. Long-term storage capacity is 500,000 compounds stored dry in an inert environment at -20 ?C where the inventory will be tracked using barcodes and an integrated database. Individual compounds can be selected at a rate of ~1,600 per hour. The intermediate term storage capacity in the compound management module is 500,000 compounds frozen at -20 ?C. The modularity of both the long-term store and compound-management modules enable additional inventory (when the collection is >500,000 compunds) to be rotated in from a remote store. The flexibility within each of the designated safety modules for implementing multiple assay formats and detection platforms will provide the diversity necessary to support a broad-based chemical genomic approach (see Facilities Statement for complete description of specifications and capabilities). A common informatics framework (Informatics Core, Section E) links the compound management and screening modules to provide a fully integrated robotic system within a robust LIMS environment. The existing screening facilities will continue to operate, thus leading to a substantial increase in screening capacity.

Agency
National Institute of Health (NIH)
Institute
National Human Genome Research Institute (NHGRI)
Type
Specialized Center--Cooperative Agreements (U54)
Project #
6U54HG005032-02
Application #
7938950
Study Section
Special Emphasis Panel (ZRG1)
Project Start
Project End
Budget Start
2009-06-01
Budget End
2010-05-31
Support Year
2
Fiscal Year
2009
Total Cost
$6,200,682
Indirect Cost
Name
Broad Institute, Inc.
Department
Type
DUNS #
623544785
City
Cambridge
State
MA
Country
United States
Zip Code
02142
McLellan, Catherine A; Vincent, Benjamin M; Solis, Norma V et al. (2018) Inhibiting mitochondrial phosphate transport as an unexploited antifungal strategy. Nat Chem Biol 14:135-141
Sharabi, Kfir; Lin, Hua; Tavares, Clint D J et al. (2017) Selective Chemical Inhibition of PGC-1? Gluconeogenic Activity Ameliorates Type 2 Diabetes. Cell 169:148-160.e15
Wagner, Florence F; Bishop, Joshua A; Gale, Jennifer P et al. (2016) Inhibitors of Glycogen Synthase Kinase 3 with Exquisite Kinome-Wide Selectivity and Their Functional Effects. ACS Chem Biol 11:1952-63
Zielonka, Jacek; Zielonka, Monika; VerPlank, Lynn et al. (2016) Mitigation of NADPH Oxidase 2 Activity as a Strategy to Inhibit Peroxynitrite Formation. J Biol Chem 291:7029-44
de Waal, Luc; Lewis, Timothy A; Rees, Matthew G et al. (2016) Identification of cancer-cytotoxic modulators of PDE3A by predictive chemogenomics. Nat Chem Biol 12:102-8
Bageshwar, Umesh K; VerPlank, Lynn; Baker, Dwight et al. (2016) High Throughput Screen for Escherichia coli Twin Arginine Translocation (Tat) Inhibitors. PLoS One 11:e0149659
Lessing, Derek; Dial, Thomas O; Wei, Chunyao et al. (2016) A high-throughput small molecule screen identifies synergism between DNA methylation and Aurora kinase pathways for X reactivation. Proc Natl Acad Sci U S A 113:14366-14371
Lewis, Timothy A; Sykes, David B; Law, Jason M et al. (2016) Development of ML390: A Human DHODH Inhibitor That Induces Differentiation in Acute Myeloid Leukemia. ACS Med Chem Lett 7:1112-1117
Lopez-Sambrooks, Cecilia; Shrimal, Shiteshu; Khodier, Carol et al. (2016) Oligosaccharyltransferase inhibition induces senescence in RTK-driven tumor cells. Nat Chem Biol 12:1023-1030
Bekendam, Roelof H; Bendapudi, Pavan K; Lin, Lin et al. (2016) A substrate-driven allosteric switch that enhances PDI catalytic activity. Nat Commun 7:12579

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