Several problems have been investigated relating to photon migration in a turbid medium. These were suggested by diagnostic applications of laser technology. The research is aimed at finding a way to incorporate anisotropic scattering effects into transport theory that are not computationally intensive, and therefore both easy to implement and able to provide physical insight. An earlier-published theory of anisotropic scattering in an infinite medium in discrete time has been extended to the continuous time domain. Further work, both theoretical and by simulation, has been carried out on utilizing the telegrapher's equation for this purpose, but this has so far proved to be more difficult than anticipated due to problems in framing appropriate boundary conditions. An approximation scheme has been developed for including the effects of pairwise distance constraints between different amino acids in a protein. This is presently being applied to evaluating the accuracy of structures determined from multidimensional NMR experiments. A next step is that of constructing an R factor for NMR, analogous to that used in crystallography. Seemingly anomalous properties of water such as an increase in diffusion constant with increasing pressure have been analyzed both theoretically and by performing molecular dynamics simulations of a lattice model of a physical system. Thermodynamic arguments have been adduced to show that one need not postulate critical behavior in order to explain anomalous properties. A study has been completed with A.M. Berezhkovskii and A. Szabo on models of chemical reaction rates that generalize the commonly-used Smoluchowski model by taking many-body effects into account as well as allowing for the motion of all species of molecules taking part in the reaction. A model of virus capping has been developed together with J. Spouge and A. Szabo. Aspects of the kinetic properties of the model are presently being investigated.

Agency
National Institute of Health (NIH)
Institute
Center for Information Technology (CIT)
Type
Intramural Research (Z01)
Project #
1Z01CT000024-19
Application #
5201612
Study Section
Project Start
Project End
Budget Start
Budget End
Support Year
19
Fiscal Year
1995
Total Cost
Indirect Cost
Name
Center for Information Technology
Department
Type
DUNS #
City
State
Country
United States
Zip Code
Shvartsman, Stanislav Y; Coppey, Mathieu; Berezhkovskii, Alexander M (2008) Dynamics of maternal morphogen gradients in Drosophila. Curr Opin Genet Dev 18:342-7
Vazquez, Marco-Vinicio; Berezhkovskii, Alexander M; Dagdug, Leonardo (2008) Diffusion in linear porous media with periodic entropy barriers: A tube formed by contacting spheres. J Chem Phys 129:046101
Berezhkovskii, Alexander M; Bezrukov, Sergey M (2008) Fluctuation theorem for channel-facilitated membrane transport of interacting and noninteracting solutes. J Phys Chem B 112:6228-32
Berezhkovskii, Alexander M; Weiss, George H (2008) Propagators and related descriptors for non-Markovian asymmetric random walks with and without boundaries. J Chem Phys 128:044914
Berezhkovskii, Alexander M; Bezrukov, Sergey M (2008) Counting translocations of strongly repelling particles through single channels: fluctuation theorem for membrane transport. Phys Rev Lett 100:038104
Coppey, Mathieu; Boettiger, Alistair N; Berezhkovskii, Alexander M et al. (2008) Nuclear trapping shapes the terminal gradient in the Drosophila embryo. Curr Biol 18:915-9
Bezrukov, Sergey M; Berezhkovskii, Alexander M; Szabo, Attila (2007) Diffusion model of solute dynamics in a membrane channel: mapping onto the two-site model and optimizing the flux. J Chem Phys 127:115101
Dagdug, Leonardo; Berezhkovskii, Alexander M; Makhnovskii, Yurii A et al. (2007) Transient diffusion in a tube with dead ends. J Chem Phys 127:224712
Berezhkovskii, A M; Pustovoit, M A; Bezrukov, S M (2007) Diffusion in a tube of varying cross section: numerical study of reduction to effective one-dimensional description. J Chem Phys 126:134706
Berezhkovskii, A M; Barzykin, A V (2007) Simple formulas for the trapping rate by nonspherical absorber and capacitance of nonspherical conductor. J Chem Phys 126:106102

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