Several problems have been investigated related to photon migration in a turbid medium, with present and potential application to the laser used as a diagnostic tool. One such study explored the use of a telegrapher's equation as an approximation which incorporates effects of anisotropic scattering, i place of commonly-used diffusion approximations. Results provided by both a theoretical and a simulation study suggest that the telegrapher's equation, although suggested in the literature of tissue optics as a useful tool, provides an inadequate approximation. A random walk model has been developed for use in handling data in fluorescence spectroscopy measurement of various sorts. As part of a project on the application of the methods of statistical mechanics to the study of protein structure and folding, J.D. Bryngelson an G.H. Weiss have explored the replacement of rigid constraints in models of proteins with elastic constraints. These are not only more realistic from the point of view of physics but have proved to be easier to handle mathematically. Present work on this project is focused on incorporating models for flexibility in polymers into a study of the relation between the accuracy required in intermolecular potentials and the accuracy of structures predicted from NMR data. A collaborative project on overall reaction rates in systems with time-varying rate constants has been initiated by G.H. Weiss together with A. Szabo (NIDDK), A.M. Berezhkovskii (Karpov Institute of Physical Chemistry) and J. Spouge (NLM). This class of problems is suggested by the occurrence of fluctuating reaction states in many receptors. A first step in this investigation is to study very idealized physical models which embody time-gating. Thus far, solutions have been obtained for the simples case of two particles in which one changes its reactant state randomly in time. Other work on many-body effects on reaction rates is presently being pursued.

Agency
National Institute of Health (NIH)
Institute
Center for Information Technology (CIT)
Type
Intramural Research (Z01)
Project #
1Z01CT000024-20
Application #
2571571
Study Section
Special Emphasis Panel (PSL)
Project Start
Project End
Budget Start
Budget End
Support Year
20
Fiscal Year
1996
Total Cost
Indirect Cost
Name
Center for Information Technology
Department
Type
DUNS #
City
State
Country
United States
Zip Code
Shvartsman, Stanislav Y; Coppey, Mathieu; Berezhkovskii, Alexander M (2008) Dynamics of maternal morphogen gradients in Drosophila. Curr Opin Genet Dev 18:342-7
Vazquez, Marco-Vinicio; Berezhkovskii, Alexander M; Dagdug, Leonardo (2008) Diffusion in linear porous media with periodic entropy barriers: A tube formed by contacting spheres. J Chem Phys 129:046101
Berezhkovskii, Alexander M; Bezrukov, Sergey M (2008) Fluctuation theorem for channel-facilitated membrane transport of interacting and noninteracting solutes. J Phys Chem B 112:6228-32
Berezhkovskii, Alexander M; Weiss, George H (2008) Propagators and related descriptors for non-Markovian asymmetric random walks with and without boundaries. J Chem Phys 128:044914
Berezhkovskii, Alexander M; Bezrukov, Sergey M (2008) Counting translocations of strongly repelling particles through single channels: fluctuation theorem for membrane transport. Phys Rev Lett 100:038104
Coppey, Mathieu; Boettiger, Alistair N; Berezhkovskii, Alexander M et al. (2008) Nuclear trapping shapes the terminal gradient in the Drosophila embryo. Curr Biol 18:915-9
Bezrukov, Sergey M; Berezhkovskii, Alexander M; Szabo, Attila (2007) Diffusion model of solute dynamics in a membrane channel: mapping onto the two-site model and optimizing the flux. J Chem Phys 127:115101
Dagdug, Leonardo; Berezhkovskii, Alexander M; Makhnovskii, Yurii A et al. (2007) Transient diffusion in a tube with dead ends. J Chem Phys 127:224712
Berezhkovskii, A M; Pustovoit, M A; Bezrukov, S M (2007) Diffusion in a tube of varying cross section: numerical study of reduction to effective one-dimensional description. J Chem Phys 126:134706
Berezhkovskii, A M; Barzykin, A V (2007) Simple formulas for the trapping rate by nonspherical absorber and capacitance of nonspherical conductor. J Chem Phys 126:106102

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