The members of the beta-globin family of genes are expressed sequentially during human development. The epsilon-globin gene is the first to be expressed, is actively transcribed until the sixth week of development, and is inactive later in development. Expression of the beta-like-globin genes is under the control of the beta-globin locus control region (LCR), encompassing erythroid specific DNase I hypersensitive sites (HS) 5-18 kilobases upstream of the epsilon-globin gene. The LCR has long range effects on the chromatin structure of the beta- globin locus, and it activates transcription of the different globin gene promoters as the genes are expressed during development. Using in vitro protein-DNA binding studies, clustered point mutations, and transient expression assays with a reporter gene, we have identified transcription factors that can be expected to participate, in vivo, in mediating the interaction of the LCR with the epsilon-globin gene promoter. These include the ubiquitous transcription factor Sp1 (or a related family member) and the erythroid transcription factors GATA-1 and NF-E2. To study the promoter-LCR interaction in the context of chromatin in vivo we have constructed a minichromosomal vector containing a marked epsilon- globin gene. Expression of the minichromosomal epsilon-globin gene in K562 human erythroid cells is dependent on the presence of the beta- globin LCR in cis. Regulated expression of the epsilon-globin gene on the minichromosomes offers a means to study at high resolution the effects of the LCR on the chromatin structure of the epsilon-globin gene, and the possibility to dissect the promoter-enhancer interaction of an activated gene assembled in vivo into chromatin.

Project Start
Project End
Budget Start
Budget End
Support Year
6
Fiscal Year
1994
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United States
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Lee, Jongjoo; Krivega, Ivan; Dale, Ryan K et al. (2017) The LDB1 Complex Co-opts CTCF for Erythroid Lineage-Specific Long-Range Enhancer Interactions. Cell Rep 19:2490-2502
Krivega, Ivan; Dean, Ann (2016) Chromatin looping as a target for altering erythroid gene expression. Ann N Y Acad Sci 1368:31-9
Deng, Wulan; Rupon, Jeremy W; Krivega, Ivan et al. (2014) Reactivation of developmentally silenced globin genes by forced chromatin looping. Cell 158:849-860
Song, Sang-Hyun; Hou, Chunhui; Dean, Ann (2007) A positive role for NLI/Ldb1 in long-range beta-globin locus control region function. Mol Cell 28:810-22
Zhao, Hui; Kim, Aeri; Song, Sang-Hyun et al. (2006) Enhancer blocking by chicken beta-globin 5'-HS4: role of enhancer strength and insulator nucleosome depletion. J Biol Chem 281:30573-80
Dean, Ann (2006) On a chromosome far, far away: LCRs and gene expression. Trends Genet 22:38-45
Zhao, Hui; Dean, Ann (2005) Organizing the genome: enhancers and insulators. Biochem Cell Biol 83:516-24
Dean, Ann (2004) Chromatin remodelling and the interaction between enhancers and promoters in the beta-globin locus. Brief Funct Genomic Proteomic 2:344-54
Kim, AeRi; Dean, Ann (2004) Developmental stage differences in chromatin subdomains of the beta-globin locus. Proc Natl Acad Sci U S A 101:7028-33
Zhao, Hui; Dean, Ann (2004) An insulator blocks spreading of histone acetylation and interferes with RNA polymerase II transfer between an enhancer and gene. Nucleic Acids Res 32:4903-19

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