The embryonic epsilon-globin gene is the first member of the beta-globin family of genes to be expressed during development. Expression of the beta-like-globin genes is under the control of the beta-globin locus control region (LCR), encompassing erythroid specific DNase I hypersensitive sites (HS) 5-18 kilobases upstream of the epsilon-globin gene. The LCR has long range effects on the chromatin structure of the beta-globin locus, and it activates transcription of the different globin gene promoters as the genes are expressed sequentially during development. Much of our current understanding of the process of gene activation has been gained from in vitro studies where DNA is not assembled with histones and other chromosomal proteins as it is in the nucleus. To study the activation of a gene in its natural context of chromatin in vivo we have used minichromosomes containing the human epsilon-globin gene and portions of the beta globin LCR enhancer. Expression of hue minichromosomal epsilon-globin gene in K562 human erythroid cells is completely dependent on the presense if the beta- globin LCR in cis. Using restriction endonuclease access, and indirect end labelling experiments, we have observed that the promoter and 5' proximal structural regions of the minichromosomal epsilon-globin gene are covered by an array of positioned nucleosomes. Both types of studies suggest alteration or loss of a single promoter-proximal nucleosome upon activation of the gene for transcription. Regulated expression of the epsilon-globin gene on the minichromsomes offers a means too study at high resolution, the promoter-enhancer interaction of an activated gene assembled in vivo into chromatin.

Project Start
Project End
Budget Start
Budget End
Support Year
7
Fiscal Year
1995
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Indirect Cost
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United States
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Lee, Jongjoo; Krivega, Ivan; Dale, Ryan K et al. (2017) The LDB1 Complex Co-opts CTCF for Erythroid Lineage-Specific Long-Range Enhancer Interactions. Cell Rep 19:2490-2502
Krivega, Ivan; Dean, Ann (2016) Chromatin looping as a target for altering erythroid gene expression. Ann N Y Acad Sci 1368:31-9
Deng, Wulan; Rupon, Jeremy W; Krivega, Ivan et al. (2014) Reactivation of developmentally silenced globin genes by forced chromatin looping. Cell 158:849-860
Song, Sang-Hyun; Hou, Chunhui; Dean, Ann (2007) A positive role for NLI/Ldb1 in long-range beta-globin locus control region function. Mol Cell 28:810-22
Zhao, Hui; Kim, Aeri; Song, Sang-Hyun et al. (2006) Enhancer blocking by chicken beta-globin 5'-HS4: role of enhancer strength and insulator nucleosome depletion. J Biol Chem 281:30573-80
Dean, Ann (2006) On a chromosome far, far away: LCRs and gene expression. Trends Genet 22:38-45
Zhao, Hui; Dean, Ann (2005) Organizing the genome: enhancers and insulators. Biochem Cell Biol 83:516-24
Dean, Ann (2004) Chromatin remodelling and the interaction between enhancers and promoters in the beta-globin locus. Brief Funct Genomic Proteomic 2:344-54
Kim, AeRi; Dean, Ann (2004) Developmental stage differences in chromatin subdomains of the beta-globin locus. Proc Natl Acad Sci U S A 101:7028-33
Zhao, Hui; Dean, Ann (2004) An insulator blocks spreading of histone acetylation and interferes with RNA polymerase II transfer between an enhancer and gene. Nucleic Acids Res 32:4903-19

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