This laboratory is interested in the relationship among protein sequence, structure and the mechanisms of protein folding and enzymic reactions. (i) Secondary Structure of Insoluble Proteins. The structure of a protein in solution is readily estimated by mathematical analysis of its circular dichroism (CD)spectrum. Proteins implicated in prion diseases are insoluble and must be studied as thin films. Under these circumstances, protein concentration, which is usually necessary for quantification and analysis of CD data cannot be determined. We have shown a concentration independent method of structure determination, which involves measurement and deconvolution of the protein's """"""""g-factor"""""""" spectrum, which is the ratio of a samples CD and absorbance spectra. (ii) Structure of Cystathionine beta Synthase (with Dr. Edith Wilson Miles and coworkers, LBG) We are investigating the conformational states of the tryptophan synthase alpha2-beta2 complex and their relevance in the enzymatic mechanism of the protein. (iii) Structure of Mammalian Sulphotransferases. (with Dr. D. Marshall and Dr. W.B. Jakoby, LBM) The enzymatic activity of a phenol sulphotransferase, from rat liver, has been shown to be regulated by reversible oxidation/reduction of a conserved specific cysteine residue by physiological concentrations of glutathione. Oxdation of cysteine residue 66 inhibits the physiological activity of the enzyme by very tight substrate inhibition. This mechanism may be important under conditions of oxidative stress to the liver. (iv) Structure of Rotavirus protein NSP2 (with Dr. Peter Schuck, ORS, OD and Dr. Z. Taraporewala, LID, NIAID) This protein is a component of the virus' replication apparatus, interacting with RNA and nucleotides. We are studying its structure and the changes induced by interaction with ligands.

Agency
National Institute of Health (NIH)
Institute
National Institute of Diabetes and Digestive and Kidney Diseases (NIDDK)
Type
Intramural Research (Z01)
Project #
1Z01DK024942-09
Application #
6507264
Study Section
(LBG)
Project Start
Project End
Budget Start
Budget End
Support Year
9
Fiscal Year
2001
Total Cost
Indirect Cost
Name
U.S. National Inst Diabetes/Digst/Kidney
Department
Type
DUNS #
City
State
Country
United States
Zip Code
McPhie, Peter; Ni, Yi-sheng; Minton, Allen P (2006) Macromolecular crowding stabilizes the molten globule form of apomyoglobin with respect to both cold and heat unfolding. J Mol Biol 361:7-10
Jang, Ming Y; Yarborough 3rd, Orlando H; Conyers, Gary B et al. (2005) Stable secondary structure near the nicking site for adeno-associated virus type 2 Rep proteins on human chromosome 19. J Virol 79:3544-56
Handa, Vaishali; Yeh, Herman J C; McPhie, Peter et al. (2005) The AUUCU repeats responsible for spinocerebellar ataxia type 10 form unusual RNA hairpins. J Biol Chem 280:29340-5
Britto, P J; Knipling, Leslie; McPhie, Peter et al. (2005) Thiol-disulphide interchange in tubulin: kinetics and the effect on polymerization. Biochem J 389:549-58
Miller, Lance D; McPhie, Peter; Suzuki, Hideyo et al. (2004) Multi-tissue gene-expression analysis in a mouse model of thyroid hormone resistance. Genome Biol 5:R31
McPhie, Peter (2004) CD studies on films of amyloid proteins and polypeptides: quantitative g-factor analysis indicates a common folding motif. Biopolymers 75:140-7
Kalinin, Andrey E; Idler, William W; Marekov, Lyuben N et al. (2004) Co-assembly of envoplakin and periplakin into oligomers and Ca(2+)-dependent vesicle binding: implications for cornified cell envelope formation in stratified squamous epithelia. J Biol Chem 279:22773-80
Sasahara, Kenji; McPhie, Peter; Minton, Allen P (2003) Effect of dextran on protein stability and conformation attributed to macromolecular crowding. J Mol Biol 326:1227-37
Ahmed, S Ashraf; McPhie, Peter; Smith, Leonard A (2003) Autocatalytically fragmented light chain of botulinum a neurotoxin is enzymatically active. Biochemistry 42:12539-49
Kamiya, Yuji; Puzianowska-Kuznicka, Monika; McPhie, Peter et al. (2002) Expression of mutant thyroid hormone nuclear receptors is associated with human renal clear cell carcinoma. Carcinogenesis 23:25-33

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