Dramatic advances have been made in the last few years in our ability to study the behavior of single macromolecules. These new experiments require sopisticated applications of cutting-edge technologies and the development of new theoretical approaches to interpret them so as to extract the maximum possible microscopic information. This has recently become the main focus of our research.In this reporting period, four papers papers dealing with the following topics appeared in print: (1) The development of an analytic theory for the current at ultramicroelectrodes. The predictions of this theory were compared with experimental results obtained using elliptical electordes obtained in the laboratory of Mark Wightman at the University of North Carolina (2) The general theory of photon counting in single-molecule spectroscopy ( specifically the statistics of transitions in an arbitratry kinetic scheme) was developped and applied to the the analysis of experiments on single molecule enzyme catalysis perfomed in the laborastory of Sunney Xie at Harvard. (3) A novel theory was developped to extract kinetic information ( specifically the intrinsic rates and free energies of activation) from single molecule pulling experiments performed using optical tweezers and atomic force microscopes. This complements the work reported last year dealing with the protocal of obtaining equilibrium free energy surfaces from single molecule force spectroscopy (4) The theory of photon counting histograms for molecules that diffuse in and out of the laser beam was formulated for the first time . Such histograms contain information about the nature of conformational changes of the fluorophores. The last three of these papers represent a significant advance in our ability to interpret single-molecule force and fluorescence spectroscopic experiments.

Agency
National Institute of Health (NIH)
Institute
National Institute of Diabetes and Digestive and Kidney Diseases (NIDDK)
Type
Intramural Research (Z01)
Project #
1Z01DK029019-26
Application #
7336245
Study Section
(LCP)
Project Start
Project End
Budget Start
Budget End
Support Year
26
Fiscal Year
2006
Total Cost
Indirect Cost
Name
U.S. National Inst Diabetes/Digst/Kidney
Department
Type
DUNS #
City
State
Country
United States
Zip Code
Berezhkovskii, Alexander; Hummer, Gerhard; Szabo, Attila (2009) Reactive flux and folding pathways in network models of coarse-grained protein dynamics. J Chem Phys 130:205102
Gopich, Irina V; Nettels, Daniel; Schuler, Benjamin et al. (2009) Protein dynamics from single-molecule fluorescence intensity correlation functions. J Chem Phys 131:095102
Bezrukov, Sergey M; Berezhkovskii, Alexander M; Szabo, Attila (2007) Diffusion model of solute dynamics in a membrane channel: mapping onto the two-site model and optimizing the flux. J Chem Phys 127:115101
Dudko, Olga K; Mathe, Jerome; Szabo, Attila et al. (2007) Extracting kinetics from single-molecule force spectroscopy: nanopore unzipping of DNA hairpins. Biophys J 92:4188-95
Berezhkovskii, Alexander; Szabo, Attila (2006) Perturbation theory of Phi-value analysis of two-state protein folding: relation between p fold and Phi values. J Chem Phys 125:104902
Dudko, Olga K; Hummer, Gerhard; Szabo, Attila (2006) Intrinsic rates and activation free energies from single-molecule pulling experiments. Phys Rev Lett 96:108101
Gopich, Irina V; Szabo, Attila (2005) Photon counting histograms for diffusing fluorophores. J Phys Chem B 109:17683-8
Gopich, Irina; Szabo, Attila (2005) Theory of photon statistics in single-molecule Forster resonance energy transfer. J Chem Phys 122:14707
Hummer, Gerhard; Szabo, Attila (2005) Free energy surfaces from single-molecule force spectroscopy. Acc Chem Res 38:504-13
Flomenbom, Ophir; Klafter, Joseph; Szabo, Attila (2005) What can one learn from two-state single-molecule trajectories? Biophys J 88:3780-3

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