Earlier developments of new methods for correlating proton chemical shifts with shifts of low-gamma nuclei have been continued. For the first time, it has been shown possible to record proton-carbon and proton-nitrogen shift correlation of small proteins (greater than 15 kD) at natural isotopic abundance. A quite different approach has been developed for correlating proton and phosphorous chemical shifts and applied to the study of oligonucleotides. New methods have been developed for recording phase-sensitive two-dimensional proton NMR spectra in water solution without the need for presaturation. In contrast to existing techniques, the new methods accomplish the water suppression in two stages: in the first stage a relatively low suppression is obtained, sufficient to overcome dynamic range problems in the receiver, in the second stage cycling removes the water signal from the spectrum almost completely. The new methods have been demonstrated for the important NOE, spin-locked NOE and homonuclear Hartmann- Hahn experiments. A new procedure has been developed for measurements of previously unresolvable coupling constants. By suppressing the effect of all scalar couplings apart from the interaction of interest in a two-dimensional experiment it becomes possible to extract the coupling constants of interest. The procedure has been applied to measurement of J(C3'H-O-P) couplings in the oligonucleotide d(CGCGAATTCGCG)2. The corresponding dihedral epsilon angles show significant differences with X-ray crystallographic work.

Project Start
Project End
Budget Start
Budget End
Support Year
4
Fiscal Year
1987
Total Cost
Indirect Cost
Name
U.S. National Inst Diabetes/Digst/Kidney
Department
Type
DUNS #
City
State
Country
United States
Zip Code
Lee, Jung Ho; Ying, Jinfa; Bax, Ad (2016) Quantitative evaluation of positive ? angle propensity in flexible regions of proteins from three-bond J couplings. Phys Chem Chem Phys 18:5759-70
Vogeli, Beat; Yao, Lishan; Bax, Ad (2008) Protein backbone motions viewed by intraresidue and sequential HN-Halpha residual dipolar couplings. J Biomol NMR 41:17-28
Chill, Jordan H; Louis, John M; Delaglio, Frank et al. (2007) Local and global structure of the monomeric subunit of the potassium channel KcsA probed by NMR. Biochim Biophys Acta 1768:3260-70
Ying, Jinfa; Chill, Jordan H; Louis, John M et al. (2007) Mixed-time parallel evolution in multiple quantum NMR experiments: sensitivity and resolution enhancement in heteronuclear NMR. J Biomol NMR 37:195-204
Grishaev, Alexander; Ying, Jinfa; Bax, Ad (2006) Pseudo-CSA restraints for NMR refinement of nucleic acid structure. J Am Chem Soc 128:10010-1
Ying, Jinfa; Grishaev, Alexander; Bryce, David L et al. (2006) Chemical shift tensors of protonated base carbons in helical RNA and DNA from NMR relaxation and liquid crystal measurements. J Am Chem Soc 128:11443-54
Ying, Jinfa; Bax, Ad (2006) 2'-hydroxyl proton positions in helical RNA from simultaneously measured heteronuclear scalar couplings and NOEs. J Am Chem Soc 128:8372-3
Chill, Jordan H; Louis, John M; Miller, Christopher et al. (2006) NMR study of the tetrameric KcsA potassium channel in detergent micelles. Protein Sci 15:684-98
Ying, Jinfa; Grishaev, Alexander; Bax, Ad (2006) Carbon-13 chemical shift anisotropy in DNA bases from field dependence of solution NMR relaxation rates. Magn Reson Chem 44:302-10
Dam, Julie; Baber, James; Grishaev, Alexander et al. (2006) Variable dimerization of the Ly49A natural killer cell receptor results in differential engagement of its MHC class I ligand. J Mol Biol 362:102-13

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