of Work: The repair of DNA double-strand breaks (DSBs) and stabilization of telomeric sequences at chromosome ends involves homologous recombination and nonhomologous end-joining (NHEJ) genes in yeast. RAD50, MRE11 and XRS2 encode subunits of a nuclease complex functioning in both pathways. Defects in the related complex in humans results in Nijmegen syndrome result in increased radiation sensitivity. Employing a novel in vivo site-directed mutagenesis scheme developed in this lab, the ATP binding function of Rad50 was found to be required for both recombination and NHEJ while the nuclease function of Mre11 was required only for recombination. This structure-function analysis provides a better understanding of the process of DSB repair. The specificity of nucleases to recombination, and not NHEJ, is consistent with the finding that overexpression of Exo1 can compensate for a defect in the Rad50/Mre11/Xrs2 complex via recombination. The investigations of DSBs and repair have been extended to determining if the nature of ends determine repair capabilities and the biological consequences. Using in vivo expressed enzymes and comparing with radiation induced DSBs, it is clear that breaks with complementary ends are repaired efficiently by NHEJ while radiation induced breaks are repaired by recombination. Surprisingly, blunt end breaks are highly toxic, suggesting that agents producing these types of breaks may be the most destabilizing to genomes. In association with this analysis, a novel approach was developed for controlled, low level expression of restriction enzymes. To study DSBs directly, a new approach was developed for the in vivo characterization of a specific chromosome DSB that permit monitoring the fate of a broken yeast chromosome. The strains contain fusions of green fluorescent protein (GFP) to the E. coli LacI repressor that can bind to an integrated binding sequence array near the site of the break. A DSB resulted in rapid movements of the nucleus and """"""""breathing"""""""" between sister chromatids at the break site.

Agency
National Institute of Health (NIH)
Institute
National Institute of Environmental Health Sciences (NIEHS)
Type
Intramural Research (Z01)
Project #
1Z01ES021016-20
Application #
6534959
Study Section
(LMG)
Project Start
Project End
Budget Start
Budget End
Support Year
20
Fiscal Year
2001
Total Cost
Indirect Cost
Name
U.S. National Inst of Environ Hlth Scis
Department
Type
DUNS #
City
State
Country
United States
Zip Code
Andres, Sara N; Appel, C Denise; Westmoreland, James W et al. (2015) Tetrameric Ctp1 coordinates DNA binding and DNA bridging in DNA double-strand-break repair. Nat Struct Mol Biol 22:158-66
Ma, Wenjian; Westmoreland, Jim W; Gordenin, Dmitry A et al. (2011) Alkylation base damage is converted into repairable double-strand breaks and complex intermediates in G2 cells lacking AP endonuclease. PLoS Genet 7:e1002059
Nakai, Wataru; Westmoreland, Jim; Yeh, Elaine et al. (2011) Chromosome integrity at a double-strand break requires exonuclease 1 and MRX. DNA Repair (Amst) 10:102-10
Argueso, Juan Lucas; Westmoreland, James; Mieczkowski, Piotr A et al. (2008) Double-strand breaks associated with repetitive DNA can reshape the genome. Proc Natl Acad Sci U S A 105:11845-50
Chen, Ling; Trujillo, Kelly M; Van Komen, Stephen et al. (2005) Effect of amino acid substitutions in the rad50 ATP binding domain on DNA double strand break repair in yeast. J Biol Chem 280:2620-7
Resnick, Michael A (2005) Reduced replication: a call to ARMS. Cell 120:569-70
Lewis, L Kevin; Karthikeyan, G; Cassiano, Jared et al. (2005) Reduction of nucleosome assembly during new DNA synthesis impairs both major pathways of double-strand break repair. Nucleic Acids Res 33:4928-39
Lewis, L Kevin; Lobachev, Kirill; Westmoreland, James W et al. (2005) Use of a restriction endonuclease cytotoxicity assay to identify inducible GAL1 promoter variants with reduced basal activity. Gene 363:183-92
Lewis, L Kevin; Storici, Francesca; Van Komen, Stephen et al. (2004) Role of the nuclease activity of Saccharomyces cerevisiae Mre11 in repair of DNA double-strand breaks in mitotic cells. Genetics 166:1701-13
Lobachev, Kirill; Vitriol, Eric; Stemple, Jennifer et al. (2004) Chromosome fragmentation after induction of a double-strand break is an active process prevented by the RMX repair complex. Curr Biol 14:2107-12

Showing the most recent 10 out of 11 publications