Aims: During the last two years my laboratory has focused its new efforts in susceptibility on DNA repair gene polymorphisms and on the measurement of repair capacity. We believe that molecular epidemiology studies of DNA repair gene polymorphisms and of DNA repair capacity can identify important risks for environmentally-associated cancers. NIEHS provides an ideal environment for molecular epidemiology research on DNA repair. The group of Intramural laboratories working on repair provides a strong basic science foundation of expert colleagues with highly specialized assay systems that facilitates our ability to examine, at the population level, the effects of polymorphisms and repair capacity on mutation and cancer risk. Research on genetic susceptibility and gene-environment interaction may identify variants of genes important to carcinogenesis and the pathways by which environmental agents damage DNA. The study of genetically susceptible subgroups may allow a more precise identification of environmental exposures that cause disease and the risk from such exposure. Finally, if important susceptibility genes are identified, it could lead to public health programs for protecting susceptible populations, and for targeted screening of groups at higher risk of disease. Procedures and techniques: PCR-RFLP, cloning, flow cytometry of GFP, luminometry, DNA transfection Accomplishments: We have demonstrated that polymorphisms in carcinogen metabolism genes and DNA repair genes affect risk of bladder cancer and found evidence for gene-environment and gene-gene interaction. We have demonstrated that polymorphism in DNA repair, vitamin D receptor, and hormone metabolism genes affect risk of prostate cancer. To measure DNA repair capacity we have adapted the host cell reactivation assay to work with two color-shifted co-transfected reporter genes using either luminescence (luciferase, renilla) or fluorescence (GFP, BFP) and have created a novel plasmid construct that provides a measure of homologous recombinational repair of DNA double strand breaks

Agency
National Institute of Health (NIH)
Institute
National Institute of Environmental Health Sciences (NIEHS)
Type
Intramural Research (Z01)
Project #
1Z01ES049033-05
Application #
6535073
Study Section
Epidemiology and Biometry Training Committee (EB)
Project Start
Project End
Budget Start
Budget End
Support Year
5
Fiscal Year
2001
Total Cost
Indirect Cost
Name
U.S. National Inst of Environ Hlth Scis
Department
Type
DUNS #
City
State
Country
United States
Zip Code
Lu, Yingchang; Beeghly-Fadiel, Alicia; Wu, Lang et al. (2018) A Transcriptome-Wide Association Study Among 97,898 Women to Identify Candidate Susceptibility Genes for Epithelial Ovarian Cancer Risk. Cancer Res 78:5419-5430
Wilson, L E; Harlid, S; Xu, Z et al. (2017) An epigenome-wide study of body mass index and DNA methylation in blood using participants from the Sister Study cohort. Int J Obes (Lond) 41:194-199
Xu, Zongli; Langie, Sabine A S; De Boever, Patrick et al. (2017) RELIC: a novel dye-bias correction method for Illumina Methylation BeadChip. BMC Genomics 18:4
Xu, Zongli; Taylor, Jack A; Leung, Yuet-Kin et al. (2016) oxBS-MLE: an efficient method to estimate 5-methylcytosine and 5-hydroxymethylcytosine in paired bisulfite and oxidative bisulfite treated DNA. Bioinformatics 32:3667-3669
Wilson, Lauren E; D'Aloisio, Aimee A; Sandler, Dale P et al. (2016) Long-term use of calcium channel blocking drugs and breast cancer risk in a prospective cohort of US and Puerto Rican women. Breast Cancer Res 18:61
Niu, Liang; Xu, Zongli; Taylor, Jack A (2016) RCP: a novel probe design bias correction method for Illumina Methylation BeadChip. Bioinformatics 32:2659-63
Xu, Zongli; Niu, Liang; Li, Leping et al. (2016) ENmix: a novel background correction method for Illumina HumanMethylation450 BeadChip. Nucleic Acids Res 44:e20
Wilson, Lauren E; Kim, Sangmi; Xu, Zongli et al. (2015) Non-Steroidal Anti-Inflammatory Drug Use and Genomic DNA Methylation in Blood. PLoS One 10:e0138920
Bensen, Jeannette T; Xu, Zongli; McKeigue, Paul M et al. (2014) Admixture mapping of prostate cancer in African Americans participating in the North Carolina-Louisiana Prostate Cancer Project (PCaP). Prostate 74:1-9
Harlid, Sophia; Xu, Zongli; Panduri, Vijayalakshmi et al. (2014) CpG sites associated with cigarette smoking: analysis of epigenome-wide data from the Sister Study. Environ Health Perspect 122:673-8

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