Normal human development involves a switch in expression from fetal-to-adult (?-to-) hemoglobin during the postnatal period. The major -globin disorders, sickle cell disease and -thalassemia, are significant sources of morbidity and mortality and among the most common genetic diseases in the world. Clinical observation that the morbidity associated with -globin disorders is ameliorated by elevated levels of fetal hemoglobin (HbF) has provided the rationale for reactivation of the silenced HbF in adult life for therapeutic benefit. Genome-wide association studies (GWAS) and subsequent functional and genetic approaches identified BCL11A as a bona fide repressor of HbF. While BCL11A is dispensable for red cell production, it is required for normal mouse development (and B-cell production), which may present a challenge for inhibiting BCL11A with systemically administered drugs (i.e. small molecules). Further, BCL11A is a transcription factor, a class considered undruggable. This project aims to identify novel genes in BCL11A-dependent and BCL11A-independent pathways that regulate HbF to further elucidate the mechanisms of human globin switching and potentially uncover targets more amenable to drug development. A genome-wide shRNA screen performed in this laboratory with primary human erythroid progenitor cultures derived from CD34+ progenitor cells has provided additional candidate genes involved in HbF regulation. The primary screen implicated RIOK3, an erythroid-specific kinase, as a negative regulator of HbF, which may lie in a BCL11A-dependent or BCL11A-independent pathway. I will further characterize the role of RIOK3 in HbF regulation through shRNA and clustered regularly interspaced short palindromic repeats (CRISPR) knockdown/knockout with phenotypic rescue in CD34+ cells. Preliminary data also implicated PRDM11 as an activator of -globin. I will further characterize the role of PRDM11 in globin switching and its synergistic effect with BCL11A by shRNA and CRISPR knockdown/knockout with phenotypic rescue in both murine erythroleukia (MEL) cells and primary human CD34+ cells in the presence/absence of BCL11A. Collectively, these studies will deepen our understanding of the fetal-to-adult switch and ?-globin gene regulation, which is critical for HbF reactivation as a therapeutic option.

Public Health Relevance

This project aims to identify molecular mechanisms contributing to elevated fetal hemoglobin levels, which holds great promise for treatment of patients with -globin disorders, including sickle cell disease and -thalassemia. The proposed study of novel regulators of fetal hemoglobin expression will impact design of novel therapies for patients with -globin disorders worldwide.

Agency
National Institute of Health (NIH)
Institute
National Institute of Diabetes and Digestive and Kidney Diseases (NIDDK)
Type
Individual Predoctoral NRSA for M.D./Ph.D. Fellowships (ADAMHA) (F30)
Project #
1F30DK103359-01A1
Application #
8908716
Study Section
Special Emphasis Panel (ZDK1)
Program Officer
Bishop, Terry Rogers
Project Start
2015-06-01
Project End
2018-05-31
Budget Start
2015-06-01
Budget End
2016-05-31
Support Year
1
Fiscal Year
2015
Total Cost
Indirect Cost
Name
Harvard Medical School
Department
Type
Schools of Medicine
DUNS #
047006379
City
Boston
State
MA
Country
United States
Zip Code
Yamauchi, Takuji; Masuda, Takeshi; Canver, Matthew C et al. (2018) Genome-wide CRISPR-Cas9 Screen Identifies Leukemia-Specific Dependence on a Pre-mRNA Metabolic Pathway Regulated by DCPS. Cancer Cell 33:386-400.e5
Canver, Matthew C; Haeussler, Maximilian; Bauer, Daniel E et al. (2018) Integrated design, execution, and analysis of arrayed and pooled CRISPR genome-editing experiments. Nat Protoc 13:946-986
Montalbano, Antonino; Canver, Matthew C; Sanjana, Neville E (2017) High-Throughput Approaches to Pinpoint Function within the Noncoding Genome. Mol Cell 68:44-59
Lessard, Samuel; Francioli, Laurent; Alfoldi, Jessica et al. (2017) Human genetic variation alters CRISPR-Cas9 on- and off-targeting specificity at therapeutically implicated loci. Proc Natl Acad Sci U S A 114:E11257-E11266
Canver, Matthew C; Bauer, Daniel E; Orkin, Stuart H (2017) Functional interrogation of non-coding DNA through CRISPR genome editing. Methods 121-122:118-129
Canver, Matthew C; Lessard, Samuel; Pinello, Luca et al. (2017) Variant-aware saturating mutagenesis using multiple Cas9 nucleases identifies regulatory elements at trait-associated loci. Nat Genet 49:625-634
Masuda, Takeshi; Wang, Xin; Maeda, Manami et al. (2016) Transcription factors LRF and BCL11A independently repress expression of fetal hemoglobin. Science 351:285-9
Canver, Matthew C; Orkin, Stuart H (2016) Customizing the genome as therapy for the ?-hemoglobinopathies. Blood 127:2536-45
Pinello, Luca; Canver, Matthew C; Hoban, Megan D et al. (2016) Analyzing CRISPR genome-editing experiments with CRISPResso. Nat Biotechnol 34:695-7
Brendel, Christian; Guda, Swaroopa; Renella, Raffaele et al. (2016) Lineage-specific BCL11A knockdown circumvents toxicities and reverses sickle phenotype. J Clin Invest 126:3868-3878

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