A multiscale methodologyinvestigates the effect of membrane proteins on lipid structure and dynamics incell membranes. The proposed strategy explores both the formation of generalised lipid microdomains andthe communicationbetween membrane proteins mediated by these lipid microdomains. Atomically detailedmolecular dynamics (MD) simulations model protein-lipid interactions and quantify the local order of theboundary lipids within the immediate solvation shell of the protein. A coarse-grained model examines thelong-time dynamicsof these boundary lipids and their exchange with lipids outside of the protein solvationshell. A time-dependent field theory couples the local perturbation induced by the protein and this exchangeprocess is coupled with mesoscopic membrane dynamics and the emergent development of long rangecorrelations in the lipid structure.

Agency
National Institute of Health (NIH)
Institute
National Institute of General Medical Sciences (NIGMS)
Type
Postdoctoral Individual National Research Service Award (F32)
Project #
5F32GM076839-02
Application #
7173787
Study Section
Special Emphasis Panel (ZRG1-F04B (20))
Program Officer
Basavappa, Ravi
Project Start
2006-01-01
Project End
2007-07-31
Budget Start
2007-01-01
Budget End
2007-07-31
Support Year
2
Fiscal Year
2007
Total Cost
$29,736
Indirect Cost
Name
University of Utah
Department
Chemistry
Type
Schools of Arts and Sciences
DUNS #
009095365
City
Salt Lake City
State
UT
Country
United States
Zip Code
84112
Krishna, Vinod; Noid, Will G; Voth, Gregory A (2009) The multiscale coarse-graining method. IV. Transferring coarse-grained potentials between temperatures. J Chem Phys 131:024103
Noid, W G; Chu, Jhih-Wei; Ayton, Gary S et al. (2008) The multiscale coarse-graining method. I. A rigorous bridge between atomistic and coarse-grained models. J Chem Phys 128:244114
Zhang, Zhiyong; Lu, Lanyuan; Noid, Will G et al. (2008) A systematic methodology for defining coarse-grained sites in large biomolecules. Biophys J 95:5073-83
Noid, W G; Chu, Jhih-Wei; Ayton, Gary S et al. (2007) Multiscale coarse-graining and structural correlations: connections to liquid-state theory. J Phys Chem B 111:4116-27
Ayton, Gary S; Noid, Will G; Voth, Gregory A (2007) Multiscale modeling of biomolecular systems: in serial and in parallel. Curr Opin Struct Biol 17:192-8