The conversion of genetically encoded adenosine (A) to inosine (I) at the wobble position of tRNA anticodons is essential for the flow of biological information. This modification allows for a single tRNA species to recognize multiple synonymous codons containing A, C or U in the last (3'-most) position and ensures that all sense codons are appropriately decoded. While these enzymes catalyze one of the most critical and widely conserved reactions in biology, a detailed understanding has been hampered by the lack of direct high resolution structural information and the inability to perform quantitative kinetic analyses. The overall goal of the proposed work is to develop the tools and infrastructure to define the structure-function relationships of the prokaryotic and eukaryotic adenosine deaminases that act on tRNA (ADATs). In order to achieve these goals, three specific aims will be addressed: 1) High resolution structural analysis of a liganded and unliganded prokaryotic wobble-specific deaminase, 2) Detailed structural and mechanistic analysis of eukaryotic wobble-specific deaminases, and 3) Identification of structural determinants in a different substrate recognition between bacterial and eukaryotic ADAT. ? ?

Agency
National Institute of Health (NIH)
Institute
National Institute of General Medical Sciences (NIGMS)
Type
Postdoctoral Individual National Research Service Award (F32)
Project #
1F32GM076988-01
Application #
7056994
Study Section
Special Emphasis Panel (ZRG1-F04B (20))
Program Officer
Flicker, Paula F
Project Start
2006-02-01
Project End
2008-06-30
Budget Start
2006-02-01
Budget End
2007-01-31
Support Year
1
Fiscal Year
2006
Total Cost
$45,976
Indirect Cost
Name
Albert Einstein College of Medicine
Department
Biochemistry
Type
Schools of Medicine
DUNS #
110521739
City
Bronx
State
NY
Country
United States
Zip Code
10461
Kim, Jungwook; Tsai, Ping-Chuan; Chen, Shi-Lu et al. (2008) Structure of diethyl phosphate bound to the binuclear metal center of phosphotriesterase. Biochemistry 47:9497-504