Magnetic resonance imaging has demonstrated the potential for non-invasive mapping of the structural and functional connectivity of the human brain in health and disease. The primary methods that have emerged include diffusion imaging and resting-state functional connectivity mapping. Although these methods have validated capabilities for connectivity mapping, they also face technical limitations which constrain their utility. Diffusion imaging is hampered by low sensitivity and the inefficiency of encoding the diffusion data. Similarly, resting-state functional connectivity is limited in temporal resolution by spatial encoding during whole brain connectivity mapping. In this research project, we hypothesize that we can greatly improve the efficiency of the data acquisition schemes in these methods via multi-slice encoding and simultaneous refocusing acquisition. For example, by increasing the number of images slices obtained per acquisition period from 1 slice to up to 6, we both increase the sensitivity of the data acquisition and greatly reduce the imaging time. This development will help advance an entire class of emerging diffusion methodology which probe the water diffusion and thus white matter and grey matter connectivity in increasing detail over the traditional diffusion tensor image. Similarly, it will increase the spatial-temporal resolution and the sensitivity of resting-state functional connectivity mapping. Improving sensitivity and reduce acquisition time will pave way for routine clinical and clinical science applications of these technologies. During the mentored phase of the project, the candidate will draw on his signal processing and optimization theory expertise to design RF pulses and reconstruction algorithms, while gaining knowledge in neuroscience and MR physic to develop acquisition sequences, as well as process and interpret the brain connectivity data. In the later stage, by combining various components of this project, experiments will be carried out to obtain high signal in vivo data in clinically relevant time frame for resting-state functional connectivity mapping and diffusion imaging via DTI, Q-ball, and DSI. The project fits the candidate's long-term career goal of establishing a high-quality independent research program on data acquisition methodology in MRI that will fully utilizes the knowledge and the inter-play between software algorithm development, MR physic, and the underlying neuroscience. The mentored phase will be carried out at the MGH Martinos Center for Biomedical Imaging where the candidate will take advantage of the advanced high-field MRI facility and expertise. Furthermore, the candidate will make use of the world renowned educational opportunities at the Center's affiliated institutions (MIT and Harvard). His career development plan includes training in MR physics and sequence design, diffusion imaging and brain connectomics, consultations with experts and coursework in neuroscience;and participation in seminars and scientific meetings. As part of initiating his own independent research program, the candidate will help mentor a graduate student who will be involved in this project.
Diffusion imaging and resting-state fMRI are potent methods for visualizing pathology and mapping connectivity in the brain. This work will develop highly efficient data acquisition scheme to increase speed and sensitivity of these methods, thus making them more applicable for clinical use.
| Poser, Benedikt A; Anderson, Robert James; Guérin, Bastien et al. (2014) Simultaneous multislice excitation by parallel transmission. Magn Reson Med 71:1416-27 |
| Bilgic, Berkin; Chatnuntawech, Itthi; Fan, Audrey P et al. (2014) Fast image reconstruction with L2-regularization. J Magn Reson Imaging 40:181-91 |
| Keil, Boris; Blau, James N; Biber, Stephan et al. (2013) A 64-channel 3T array coil for accelerated brain MRI. Magn Reson Med 70:248-58 |
| Bilgic, Berkin; Chatnuntawech, Itthi; Setsompop, Kawin et al. (2013) Fast dictionary-based reconstruction for diffusion spectrum imaging. IEEE Trans Med Imaging 32:2022-33 |
| Feinberg, David A; Setsompop, Kawin (2013) Ultra-fast MRI of the human brain with simultaneous multi-slice imaging. J Magn Reson 229:90-100 |
| Setsompop, K; Kimmlingen, R; Eberlein, E et al. (2013) Pushing the limits of in vivo diffusion MRI for the Human Connectome Project. Neuroimage 80:220-33 |
| Bilgic, Berkin; Setsompop, Kawin; Cohen-Adad, Julien et al. (2012) Accelerated diffusion spectrum imaging with compressed sensing using adaptive dictionaries. Magn Reson Med 68:1747-54 |
| Setsompop, K; Cohen-Adad, J; Gagoski, B A et al. (2012) Improving diffusion MRI using simultaneous multi-slice echo planar imaging. Neuroimage 63:569-80 |
| Setsompop, Kawin; Gagoski, Borjan A; Polimeni, Jonathan R et al. (2012) Blipped-controlled aliasing in parallel imaging for simultaneous multislice echo planar imaging with reduced g-factor penalty. Magn Reson Med 67:1210-24 |
