The objectives of this research are to determine the mutational spectra of lesions produced in mammalian cells and bacteria when exocyclic adducts are introduced at specific genomic sites and to delineate recombinational events as they relate to mutagenesis produced by such adducts. DNA adducts may be removed by the concerted action of repair enzymes acting throughout the genome. When this process is incomplete, the stage is set for errors in DNA replication that lead to mutation. We intend to inves- tigate several aspects of DNA repair as it relates to the structure and function of exocyclic adducts. We have developed experimental systems, using SV40-based shuttle plasmid vectors, by which the mutagenic spectra of selected DNA adducts can be determined. This approach allows us to examine the sequence specificity of mutational reactions with particular reference to """"""""hot spots"""""""" and proto- oncogenes. Using these systems, which reflect forward mutagenic events produced by a single species of DNA adduct and by correlating our studies with the results of molecular modeling and 2D-NMR experiments, we hope to define structure-activity relationships that will assist in elucidating mechanisms of chemical mutagenesis and, possibly, predict mutagenic effects for certain classes of chemical carcinogens.

Agency
National Institute of Health (NIH)
Institute
National Cancer Institute (NCI)
Type
Research Program Projects (P01)
Project #
5P01CA047995-08
Application #
6269371
Study Section
Project Start
1998-03-10
Project End
1999-01-31
Budget Start
1997-10-01
Budget End
1998-09-30
Support Year
8
Fiscal Year
1998
Total Cost
Indirect Cost
Name
State University New York Stony Brook
Department
Type
DUNS #
804878247
City
Stony Brook
State
NY
Country
United States
Zip Code
11794
Minetti, Conceição A S A; Remeta, David P; Iden, Charles R et al. (2015) Impact of thymine glycol damage on DNA duplex energetics: Correlations with lesion-induced biochemical and structural consequences. Biopolymers 103:491-508
Völker, Jens; Plum, G Eric; Gindikin, Vera et al. (2014) Impact of bulge loop size on DNA triplet repeat domains: Implications for DNA repair and expansion. Biopolymers 101:1-12
Li, Mengxia; Völker, Jens; Breslauer, Kenneth J et al. (2014) APE1 incision activity at abasic sites in tandem repeat sequences. J Mol Biol 426:2183-98
Braunlin, William; Völker, Jens; Plum, G Eric et al. (2013) DNA meter: Energy tunable, quantitative hybridization assay. Biopolymers 99:408-17
Völker, Jens; Gindikin, Vera; Klump, Horst H et al. (2012) Energy landscapes of dynamic ensembles of rolling triplet repeat bulge loops: implications for DNA expansion associated with disease states. J Am Chem Soc 134:6033-44
Lukin, Mark; Minetti, Conceicao A S A; Remeta, David P et al. (2011) Novel post-synthetic generation, isomeric resolution, and characterization of Fapy-dG within oligodeoxynucleotides: differential anomeric impacts on DNA duplex properties. Nucleic Acids Res 39:5776-89
Lukin, Mark; de los Santos, Carlos (2010) Stereoselective nucleoside deuteration for NMR studies of DNA. Nucleosides Nucleotides Nucleic Acids 29:562-73
Hazel, Raphael D; de los Santos, Carlos (2010) NMR solution structures of clustered abasic site lesions in DNA: structural differences between 3'-staggered (-3) and 5'-staggered (+3) bistranded lesions. Biochemistry 49:8978-87
Völker, Jens; Plum, G Eric; Klump, Horst H et al. (2010) Energetic coupling between clustered lesions modulated by intervening triplet repeat bulge loops: allosteric implications for DNA repair and triplet repeat expansion. Biopolymers 93:355-69
Zaliznyak, Tanya; Lukin, Mark; El-khateeb, Mahmoud et al. (2010) NMR structure of duplex DNA containing the alpha-OH-PdG.dA base pair: a mutagenic intermediate of acrolein. Biopolymers 93:391-401

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