Autophagy is a major cellular recycling process by which cytosolic cargo is sequestered and degraded in the lysosome. This multi-step process plays important roles in development, disease, and aging. Direct links between autophagy and aging exist in multiple conserved longevity paradigms; such long-lived animals are thought to induce autophagy in a beneficial manner, yet the underlying mechanisms remain elusive. Ours and others' research have firmly established links between autophagy and longevity in the nematode C. elegans by showing that autophagy genes are required for the long lifespan of all conserved longevity paradigms tested. Moreover, our unpublished results indicate that autophagy is functionally relevant for longevity in all major tissues of the long-lived C. elegans mutants we have analyzed so far, and autophagy generally appears induced in tissues of long-lived mutants, but declines over time in wild-type animals. We and others have also shown that several transcriptional and post-translational regulators of autophagy play roles in aging, suggesting that autophagy is subject to complex regulation over time. While collectively establishing a critical role for autophagy in multiple tissues of C. elegans, these studies did not address which tissue-specific functions autophagy may control that affect organismal healthspan. Moreover, it is unclear how autophagy is temporally and spatially regulated in long-lived mutants and during normal aging. The goal of this application is to address these gaps in knowledge by using a combination of genetic, biochemical and behavioral assays primarily in C. elegans, but also in mammalian systems. Specifically, in Aim 1, we will use quantitative PCR and targeted proteomics to characterize how the autophagy process is regulated during aging in C. elegans and murine tissues. Moreover, we will use SILAC-coupled proteomics to measure degradation rates of select autophagy cargos in C. elegans tissues.
In Aim 2, we will analyze tissue-specific roles for autophagy in C. elegans healthspan, and analyze the effects on health- and lifespan of overexpressing key autophagy-regulatory genes in a temporal and spatial-controlled manner. Finally, in Aim 3, we will use genetic and biochemical screening approaches to search for new regulators of autophagy, including factors important for autophagic cargo recognition. Autophagy plays critical roles in many diseases, including age-related disorders such as neurodegeneration. Understanding the regulation of autophagy and the conserved mechanisms by which autophagy affect aging in multicellular organisms like C. elegans are likely to provide new important insights not only into aging but may also help develop treatments for such age-related diseases.

Public Health Relevance

The US population of elderly people is rapidly growing and age-related diseases constitute a major health issue in our society; however, the cellular and molecular basis of aging and age-related disorders is poorly understood. This proposal aims to determine how autophagy ? a cellular process of cytoplasmic degradation with major biological functions ? modulates organismal aging. The proposed research has relevance to public health, because the mechanisms to be investigated are evolutionary conserved and the findings might ultimately provide therapies to treat aging-related diseases.

Agency
National Institute of Health (NIH)
Institute
National Institute on Aging (NIA)
Type
Research Project (R01)
Project #
5R01AG038664-07
Application #
9341056
Study Section
Cellular Mechanisms in Aging and Development Study Section (CMAD)
Program Officer
Velazquez, Jose M
Project Start
2011-08-15
Project End
2021-04-30
Budget Start
2017-05-01
Budget End
2018-04-30
Support Year
7
Fiscal Year
2017
Total Cost
Indirect Cost
Name
Sanford Burnham Prebys Medical Discovery Institute
Department
Type
DUNS #
020520466
City
La Jolla
State
CA
Country
United States
Zip Code
92037
Lubas, Michal; Harder, Lea M; Kumsta, Caroline et al. (2018) eIF5A is required for autophagy by mediating ATG3 translation. EMBO Rep 19:
Hansen, Malene; Rubinsztein, David C; Walker, David W (2018) Autophagy as a promoter of longevity: insights from model organisms. Nat Rev Mol Cell Biol 19:579-593
Madhivanan, Kayalvizhi; Greiner, Erin R; Alves-Ferreira, Miguel et al. (2018) Cellular clearance of circulating transthyretin decreases cell-nonautonomous proteotoxicity in Caenorhabditis elegans. Proc Natl Acad Sci U S A 115:E7710-E7719
Kapahi, Pankaj; Kaeberlein, Matt; Hansen, Malene (2017) Dietary restriction and lifespan: Lessons from invertebrate models. Ageing Res Rev 39:3-14
Ruf, Stefanie; Heberle, Alexander Martin; Langelaar-Makkinje, Miriam et al. (2017) PLK1 (polo like kinase 1) inhibits MTOR complex 1 and promotes autophagy. Autophagy 13:486-505
Kumsta, Caroline; Hansen, Malene (2017) Hormetic heat shock and HSF-1 overexpression improve C. elegans survival and proteostasis by inducing autophagy. Autophagy 13:1076-1077
Chang, Jessica T; Kumsta, Caroline; Hellman, Andrew B et al. (2017) Spatiotemporal regulation of autophagy during Caenorhabditis elegans aging. Elife 6:
Galluzzi, Lorenzo; Baehrecke, Eric H; Ballabio, Andrea et al. (2017) Molecular definitions of autophagy and related processes. EMBO J 36:1811-1836
Kumsta, Caroline; Chang, Jessica T; Schmalz, Jessica et al. (2017) Hormetic heat stress and HSF-1 induce autophagy to improve survival and proteostasis in C. elegans. Nat Commun 8:14337
Hansen, Malene; Kennedy, Brian K (2016) Does Longer Lifespan Mean Longer Healthspan? Trends Cell Biol 26:565-568

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