This is a resubmission of a renewal application for a second five years of funding for ?Role of Retromer-mediated Retrograde Transport in HPV Entry,? 5R01-AI102876. Despite effective vaccines, HPV infection and HPV-induced diseases remain a major public health problem worldwide. HPV is the most common sexually transmitted virus and is responsible for 5% of all cancer, millions of cases of genital warts, and countless cases of other types of cutaneous and mucosal warts (most caused by non- vaccine HPV types). There are no specific treatments for HPV. With the support of this grant, we have made important contributions to understanding intracellular trafficking of HPV during entry. We discovered the central role of retrograde transport in HPV infection, showed that retromer is required for sorting of the incoming virus particle into the retrograde pathway and that HPV is a new class of retromer cargo, and discovered a novel cell-penetrating peptide (CPP) on the L2 capsid protein that drives it into the cytoplasm to engage the retromer. This is the first example where retromer or a CPP has been shown to play a role in virus entry. These results have been published in top journals and have fundamentally changed our understanding of HPV entry and challenged dogma concerning the biological roles of retromer and CPPs and the definition of transmembrane proteins. Here, we will study how the L2 protein accomplishes these amazing feats. We will determine the sequence and physiological requirements for L2 protrusion using a novel split-GFP assay we developed. We will test our hypothesis that the abundance of CPP sequences in the extant papillomavirus virome reflects their membrane- penetrating activity and we will establish how sequences flanking the core CPP modulate its activity. We will establish the nature and extent of L2 membrane protrusion and determine if L2 truly adopts a TM orientation, map L2 segments exposed in the cytoplasm, and test whether it protrudes through the membrane sequentially. We will continue to isolate and characterize artificial small TM proteins that inhibit HPV entry and use them to identify novel HPV entry factors and dissect their contribution to retrograde trafficking, and we will exploit our new-found mechanistic understanding of HPV entry to design inhibitory peptides that harness the membrane-penetrating activity of CPPs to deliver the retromer binding site into the cytoplasm where it displaces retromer from incoming HPV. These experiments will elucidate important mechanistic aspects of HPV entry, lead to the development of new approaches to prevent and treat HPV infection, and provide important new insights into fundamental cell biology.

Public Health Relevance

The human papillomaviruses (HPV) are responsible for approximately 5% of all cancer deaths worldwide, and most people, including underserved populations in the U.S., will remain unvaccinated against HPV for the foreseeable future. We have identified and characterized cellular proteins required for HPV infection, and here we will focus on the role of one of these proteins, retromer, in infection. These studies will suggest new approaches to inhibit infection by these important human tumor viruses and provide new insights into fundamental cellular processes.

Agency
National Institute of Health (NIH)
Institute
National Institute of Allergy and Infectious Diseases (NIAID)
Type
Research Project (R01)
Project #
5R01AI102876-07
Application #
10020312
Study Section
Virology - A Study Section (VIRA)
Program Officer
Natarajan, Ramya
Project Start
2013-09-18
Project End
2024-08-31
Budget Start
2020-09-01
Budget End
2021-08-31
Support Year
7
Fiscal Year
2020
Total Cost
Indirect Cost
Name
Yale University
Department
Genetics
Type
Schools of Medicine
DUNS #
043207562
City
New Haven
State
CT
Country
United States
Zip Code
06520
Zhang, Pengwei; Monteiro da Silva, Gabriel; Deatherage, Catherine et al. (2018) Cell-Penetrating Peptide Mediates Intracellular Membrane Passage of Human Papillomavirus L2 Protein to Trigger Retrograde Trafficking. Cell 174:1465-1476.e13
Inoue, Takamasa; Zhang, Pengwei; Zhang, Wei et al. (2018) ?-Secretase promotes membrane insertion of the human papillomavirus L2 capsid protein during virus infection. J Cell Biol 217:3545-3559
Lipovsky, Alex; Erden, Asu; Kanaya, Eriko et al. (2017) The cellular endosomal protein stannin inhibits intracellular trafficking of human papillomavirus during virus entry. J Gen Virol 98:2821-2836
Zhang, Wei; Xie, Mingyi; Shu, Mei-Di et al. (2016) A proximity-dependent assay for specific RNA-protein interactions in intact cells. RNA 22:1785-1792
DiMaio, Daniel (2016) Thank You, Edward. Merci, Louis. PLoS Pathog 12:e1005320
Lipovsky, Alex; Zhang, Wei; Iwasaki, Akiko et al. (2015) Application of the proximity-dependent assay and fluorescence imaging approaches to study viral entry pathways. Methods Mol Biol 1270:437-51
Popa, Andreea; Zhang, Wei; Harrison, Megan S et al. (2015) Direct binding of retromer to human papillomavirus type 16 minor capsid protein L2 mediates endosome exit during viral infection. PLoS Pathog 11:e1004699
DiMaio, Daniel; Burd, Christopher G; Goodner, Kylia (2015) Riding the R Train into the Cell. PLoS Pathog 11:e1005036
Dimaio, Daniel (2014) Is virology dead? MBio 5:e01003-14
Zhang, Wei; Kazakov, Teymur; Popa, Andreea et al. (2014) Vesicular trafficking of incoming human papillomavirus 16 to the Golgi apparatus and endoplasmic reticulum requires ?-secretase activity. MBio 5:e01777-14