The general long-term goal of this program involving heme proteins is to attain an understanding of the molecular mechanisms by which the associated polypeptides interact with a common heme group to produce the remarkable functional diversity which is characteristic of this class of proteins. The essential strategy is to apply powerful spectroscopic probes such as resonance Raman (RR) and time-resolved Raman (TR3) to the native and systematically manipulated proteins in order to reveal the structural and dynamic interactions which regulate heme reactivity. Inasmuch as these proteins are involved in a large number of important physiological processes, including oxygen transport and many types of oxidative metabolic pathways, identification of the factors responsible for this widely varied function would be of obvious benefit for attaining an understanding of their behavior in normal and abnormal states. In the work proposed here an effective strategy recently documented for the native hemoglobin tetramer, which exploits the isotopic sensitivity of molecular vibrations, is being applied to selected site modified hemoglobins. The new data to be accumulated is expected to lead to a better understanding of the molecular mechanism of cooperative ligand binding by hemoglobin, a protein which serves as a paradigm for generally important allosteric processes. In addition, resonance Raman spectroscopy will be used to probe the active site structures of site modified derivatives of oxidative heme enzymes such as cytochromes P450 and mammalian peroxidases, proteins which are important in many metabolic processes and in defense against microorganisms.

Agency
National Institute of Health (NIH)
Institute
National Institute of Diabetes and Digestive and Kidney Diseases (NIDDK)
Type
Research Project (R01)
Project #
2R01DK035153-14
Application #
6193583
Study Section
Metallobiochemistry Study Section (BMT)
Program Officer
Sechi, Salvatore
Project Start
1984-07-01
Project End
2004-06-30
Budget Start
2000-07-17
Budget End
2001-06-30
Support Year
14
Fiscal Year
2000
Total Cost
$226,549
Indirect Cost
Name
Marquette University
Department
Chemistry
Type
Schools of Arts and Sciences
DUNS #
046929621
City
Milwaukee
State
WI
Country
United States
Zip Code
53201
Mak, Piotr J; Denisov, Ilia G; Grinkova, Yelena V et al. (2011) Defining CYP3A4 structural responses to substrate binding. Raman spectroscopic studies of a nanodisc-incorporated mammalian cytochrome P450. J Am Chem Soc 133:1357-66
Mak, Piotr J; Zhang, Haoming; Hollenberg, Paul F et al. (2010) Defining the structural consequences of mechanism-based inactivation of mammalian cytochrome P450 2B4 using resonance Raman spectroscopy. J Am Chem Soc 132:1494-5
Balakrishnan, Gurusamy; Ibrahim, Mohammed; Mak, Piotr J et al. (2009) Linking conformation change to hemoglobin activation via chain-selective time-resolved resonance Raman spectroscopy of protoheme/mesoheme hybrids. J Biol Inorg Chem 14:741-50
Balakrishnan, Gurusamy; Zhao, Xiaojie; Podstawska, Edyta et al. (2009) Subunit-selective interrogation of CO recombination in carbonmonoxy hemoglobin by isotope-edited time-resolved resonance Raman spectroscopy. Biochemistry 48:3120-6
Rwere, Freeborn; Mak, Piotr J; Kincaid, James R (2008) Resonance Raman interrogation of the consequences of heme rotational disorder in myoglobin and its ligated derivatives. Biochemistry 47:12869-77
Denisov, Ilia G; Mak, Piotr J; Makris, Thomas M et al. (2008) Resonance Raman characterization of the peroxo and hydroperoxo intermediates in cytochrome P450. J Phys Chem A 112:13172-9
Mak, Piotr J; Kincaid, James R (2008) Resonance Raman spectroscopic studies of hydroperoxo derivatives of cobalt-substituted myoglobin. J Inorg Biochem 102:1952-7
Mak, Piotr J; Kaluka, Daniel; Manyumwa, Munyaradzi Edith et al. (2008) Defining resonance Raman spectral responses to substrate binding by cytochrome P450 from Pseudomonas putida. Biopolymers 89:1045-53
Mak, Piotr J; Im, Sang-Choul; Zhang, Haoming et al. (2008) Resonance Raman studies of cytochrome P450 2B4 in its interactions with substrates and redox partners. Biochemistry 47:3950-63
Mak, Piotr J; Denisov, Ilia G; Victoria, Doreen et al. (2007) Resonance Raman detection of the hydroperoxo intermediate in the cytochrome P450 enzymatic cycle. J Am Chem Soc 129:6382-3

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