The purpose of this laboratory is to explore the molecular mechanisms that determine the RNA replication process of HCV and of the HCV-related pestivirus BVDV. Previously, we identified and characterized the HCV RNA polymerase and developed a tissue culture system for BDV replication that we used to identify signals on viral RNA controlling translation and replication. Building on our expertise with BVDV, the scope of this application is to investigate the viral and cellular determinants that orchestrate the replication of the HCV genome. Comprehensive reverse genetic and biochemical studies will be performed to determine the functions of the viral proteins and RNA elements as well as a set of recently identified host proteins required for HCV replication. The hepatitis C virus (HCV) endemic affects more than 170 million people which are at risk for the development of severe liver disease including fibrosis, cirrhosis and hepatocullular carcinoma. The characterization of viral and cellular factors that play a role in the HCV life cycle is expected to lead to a better understanding of the mechanism responsible for the persistence of the virus in infected patients. In addition, it will reveal novel targets that can be used for the future development of effective antiviral drugs.

Agency
National Institute of Health (NIH)
Institute
National Institute of Diabetes and Digestive and Kidney Diseases (NIDDK)
Type
Research Project (R01)
Project #
5R01DK062847-02
Application #
6941198
Study Section
Special Emphasis Panel (ZRG1-EVR (01))
Program Officer
Doo, Edward
Project Start
2004-08-21
Project End
2009-07-31
Budget Start
2005-08-01
Budget End
2006-07-31
Support Year
2
Fiscal Year
2005
Total Cost
$299,200
Indirect Cost
Name
Institute for Cancer Research
Department
Type
DUNS #
064367329
City
Philadelphia
State
PA
Country
United States
Zip Code
19111
Reich, Stefan; Kovermann, Michael; Lilie, Hauke et al. (2014) Initiation of RNA synthesis by the hepatitis C virus RNA-dependent RNA polymerase is affected by the structure of the RNA template. Biochemistry 53:7002-12
Geissler, Rene; Golbik, Ralph P; Behrens, Sven-Erik (2012) The DEAD-box helicase DDX3 supports the assembly of functional 80S ribosomes. Nucleic Acids Res 40:4998-5011
Reich, Stefan; Golbik, Ralph Peter; Geissler, René et al. (2010) Mechanisms of activity and inhibition of the hepatitis C virus RNA-dependent RNA polymerase. J Biol Chem 285:13685-93
Isken, Olaf; Baroth, Martina; Grassmann, Claus W et al. (2007) Nuclear factors are involved in hepatitis C virus RNA replication. RNA 13:1675-92
Grassmann, Claus Wilhelm; Yu, Haiying; Isken, Olaf et al. (2005) Hepatitis C virus and the related bovine viral diarrhea virus considerably differ in the functional organization of the 5' non-translated region: implications for the viral life cycle. Virology 333:349-66