This proposal aims at the design, preparation, and testing of microfluidic devices containing porous polymer monoliths that will provide unmatched performance in """"""""sample preparation"""""""" and the identification of proteins in complex mixtures and enable full exploitation of the rich potential of proteomic research. It will provide access to an enhanced array of tools for handling biological samples. The devices made of glass or plastic will contain functional monoliths prepared in situ from liquid precursors via a simple free radical polymerization process. This will afford a generic macroporous monolithic polymer with porous properties optimized for the desired application that can subsequently be functionalized by UV intiated photografting. The photografting enables the placement of sevral different functionalities (such as hydrophobic, hydrophilic, ionizable, or affinity) in precise locations placed in series or as layered or gradient chemistriecollection, enzymatic digeston of proteins, and separation of peptides will be prepared. Difficult protein mixtures will be separated into less complex samples using separation modules with carefully designed selectivities. Optimization of structural properties of the monoliths is expected to afford recoveries close to 100% for all of the proteins present in the sample. Specifics attention will also be paid to designing and controlling all preparation processes to ensure high batch-to-batch reproducibility of both building blocks and composite devices. Direct coupling of these devices to a mass spectrometer will simplify and accelerate proteomic research. We expect that this project will result in the practical implementation of a totally new array of versatile components and devices for sample preparation and the mass spectroscopic study of proteomes or their components extending microanalytical capabilities well beyond the current state of the art. ? ? ? ????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????

Agency
National Institute of Health (NIH)
Institute
National Institute of Biomedical Imaging and Bioengineering (NIBIB)
Type
Research Project (R01)
Project #
5R01EB006133-02
Application #
7195115
Study Section
Enabling Bioanalytical and Biophysical Technologies Study Section (EBT)
Program Officer
Korte, Brenda
Project Start
2006-06-01
Project End
2010-03-31
Budget Start
2007-04-01
Budget End
2008-03-31
Support Year
2
Fiscal Year
2007
Total Cost
$312,086
Indirect Cost
Name
University of California Berkeley
Department
Chemistry
Type
Schools of Arts and Sciences
DUNS #
124726725
City
Berkeley
State
CA
Country
United States
Zip Code
94704
Svec, Frantisek (2012) Quest for organic polymer-based monolithic columns affording enhanced efficiency in high performance liquid chromatography separations of small molecules in isocratic mode. J Chromatogr A 1228:250-62
Walsh, Zarah; Levkin, Pavel A; Abele, Silvija et al. (2011) Polymerisation and surface modification of methacrylate monoliths in polyimide channels and polyimide coated capillaries using 660 nm light emitting diodes. J Chromatogr A 1218:2954-62
Svec, Frantisek (2010) Porous polymer monoliths: amazingly wide variety of techniques enabling their preparation. J Chromatogr A 1217:902-24
Levkin, Pavel A; Svec, Frantisek; Frechet, Jean M J (2009) Porous polymer coatings: a versatile approach to superhydrophobic surfaces. Adv Funct Mater 19:1993-1998
Svec, Frantisek (2009) CEC: selected developments that caught my eye since the year 2000. Electrophoresis 30 Suppl 1:S68-82
Mair, Dieudonne A; Schwei, Thomas R; Dinio, Theresa S et al. (2009) Use of photopatterned porous polymer monoliths as passive micromixers to enhance mixing efficiency for on-chip labeling reactions. Lab Chip 9:877-83
Nischang, Ivo; Svec, Frantisek; Fréchet, Jean M J (2009) Effect of capillary cross-section geometry and size on the separation of proteins in gradient mode using monolithic poly(butyl methacrylate-co-ethylene dimethacrylate) columns. J Chromatogr A 1216:2355-61
Levkin, Pavel A; Eeltink, Sebastiaan; Stratton, Thomas R et al. (2008) Monolithic porous polymer stationary phases in polyimide chips for the fast high-performance liquid chromatography separation of proteins and peptides. J Chromatogr A 1200:55-61
Stachowiak, Timothy B; Mair, Dieudonne A; Holden, Tyler G et al. (2007) Hydrophilic surface modification of cyclic olefin copolymer microfluidic chips using sequential photografting. J Sep Sci 30:1088-93
Mair, Dieudonne A; Rolandi, Marco; Snauko, Marian et al. (2007) Room-temperature bonding for plastic high-pressure microfluidic chips. Anal Chem 79:5097-102

Showing the most recent 10 out of 11 publications