is being developed for molecular mechanisms for activity of carboxypeptidase A, and of both activity and allosteric regulation in aspartate transcarbamylase. On carboxypeptidase A, we hope to obtain a single crystal at minus 40 degrees C of the anhydride intermediate in ester hydrolysis, to obtain X-ray diffraction data on this and many other derivatives associated with activation, inhibition, metal substitution for Zn ion 2 at the active site, and binding modes of substrates and their analogues. Further studies of the binding of the 39 amino acid inhibitor of the potato to carboxypeptidase A are under way. On asparate transcarbamylase, we expect to solve the three-dimensional structure to 2.8 A resolution of the complex of this enzyme with PALA (N-phosphonacetyl-L-aspartate), a substrate analogue in use for treatment of human tumors. Comparison of this R(active) structure with our newly refined structures of the T(inactive) form should indicate the nature of the allosteric conformational change. Chemical modifications and mutants will be studied by X-ray diffraction and biochemical methods to elucidate the structure functional relationships. Theoretical studies of enzyme reaction mechanisms, and X-ray diffraction studies of smaller biochemically important molecules (beta-amanitin, Li chelates, etc.) will also be carried out.

Agency
National Institute of Health (NIH)
Institute
National Institute of General Medical Sciences (NIGMS)
Type
Research Project (R01)
Project #
3R01GM006920-26S1
Application #
3267921
Study Section
Biophysics and Biophysical Chemistry A Study Section (BBCA)
Project Start
1975-09-01
Project End
1986-03-31
Budget Start
1985-09-23
Budget End
1986-03-31
Support Year
26
Fiscal Year
1985
Total Cost
Indirect Cost
Name
Harvard University
Department
Type
Schools of Arts and Sciences
DUNS #
071723621
City
Cambridge
State
MA
Country
United States
Zip Code
Lipscomb, William N; Kantrowitz, Evan R (2012) Structure and mechanisms of Escherichia coli aspartate transcarbamoylase. Acc Chem Res 45:444-53
Kim, H; Lipscomb, W N (1994) Structure and mechanism of bovine lens leucine aminopeptidase. Adv Enzymol Relat Areas Mol Biol 68:153-213
Xue, Y; Lipscomb, W N (1994) The crystallization and preliminary X-ray analysis of allosteric chorismate mutase. J Mol Biol 241:273-4
Gidh-Jain, M; Zhang, Y; van Poelje, P D et al. (1994) The allosteric site of human liver fructose-1,6-bisphosphatase. Analysis of six AMP site mutants based on the crystal structure. J Biol Chem 269:27732-8
Xue, Y; Lipscomb, W N; Graf, R et al. (1994) The crystal structure of allosteric chorismate mutase at 2.2-A resolution. Proc Natl Acad Sci U S A 91:10814-8
Lipscomb, W N (1994) Aspartate transcarbamylase from Escherichia coli: activity and regulation. Adv Enzymol Relat Areas Mol Biol 68:67-151
Xue, Y; Huang, S; Liang, J Y et al. (1994) Crystal structure of fructose-1,6-bisphosphatase complexed with fructose 2,6-bisphosphate, AMP, and Zn2+ at 2.0-A resolution: aspects of synergism between inhibitors. Proc Natl Acad Sci U S A 91:12482-6
Chook, Y M; Gray, J V; Ke, H et al. (1994) The monofunctional chorismate mutase from Bacillus subtilis. Structure determination of chorismate mutase and its complexes with a transition state analog and prephenate, and implications for the mechanism of the enzymatic reaction. J Mol Biol 240:476-500
Zhang, Y; Liang, J Y; Huang, S et al. (1994) Toward a mechanism for the allosteric transition of pig kidney fructose-1,6-bisphosphatase. J Mol Biol 244:609-24
Reinisch, K M; Chen, L; Verdine, G L et al. (1994) Crystallization and preliminary crystallographic analysis of a DNA (cytosine-5)-methyltransferase from Haemophilus aegyptius bound covalently to DNA. J Mol Biol 238:626-9

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