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Zhou, Yiyong; Cras-Meneur, Corentin; Ohsugi, Mitsuru et al. (2007) A global approach to identify differentially expressed genes in cDNA (two-color) microarray experiments. Bioinformatics 23:2073-9
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Liu, Jiajian; Stormo, Gary D (2005) Combining SELEX with quantitative assays to rapidly obtain accurate models of protein-DNA interactions. Nucleic Acids Res 33:e141
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Liu, Jiajian; Stormo, Gary D (2005) Quantitative analysis of EGR proteins binding to DNA: assessing additivity in both the binding site and the protein. BMC Bioinformatics 6:176
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Man, Tsz-Kwong; Yang, Joshua SungWoo; Stormo, Gary D (2004) Quantitative modeling of DNA-protein interactions: effects of amino acid substitutions on binding specificity of the Mnt repressor. Nucleic Acids Res 32:4026-32
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Li, Jin Billy; Gerdes, Jantje M; Haycraft, Courtney J et al. (2004) Comparative genomics identifies a flagellar and basal body proteome that includes the BBS5 human disease gene. Cell 117:541-52
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GuhaThakurta, Debraj; Schriefer, Lawrence A; Waterston, Robert H et al. (2004) Novel transcription regulatory elements in Caenorhabditis elegans muscle genes. Genome Res 14:2457-68
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Liu, Jiajian; Tan, Kai; Stormo, Gary D (2003) Computational identification of the Spo0A-phosphate regulon that is essential for the cellular differentiation and development in Gram-positive spore-forming bacteria. Nucleic Acids Res 31:6891-903
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Benos, Panayiotis V; Bulyk, Martha L; Stormo, Gary D (2002) Additivity in protein-DNA interactions: how good an approximation is it? Nucleic Acids Res 30:4442-51
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Silbaq, Fauzi S; Ruttenberg, Steven E; Stormo, Gary D (2002) Specificity of Mnt 'master residue' obtained from in vivo and in vitro selections. Nucleic Acids Res 30:5539-48
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Lin, Yiing; Han, Mei; Shimada, Brian et al. (2002) Influence of the period-dependent circadian clock on diurnal, circadian, and aperiodic gene expression in Drosophila melanogaster. Proc Natl Acad Sci U S A 99:9562-7
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Showing the most recent 10 out of 36 publications
