The structures of three extradiol dioxygenases involved in the microbial degradation of detrimental aromatic compounds will be determined at atomic resolution by X-ray crystallography. Structures of complexes of the enzymes with substrates and inhibitors also will be determined. The structural information will be analyzed with respect to the biochemical functions of these and related enzymes. The immediate goals of this project include the specification of the structural determinants of substrate binding and catalysis. Extradiol dioxygenases are a class of nonheme,Fe(II)-dependent enzymes that play critical roles in the catabolism of aromatic compounds by virtue of their ability to catalyze the cleavage of aromatic rings. Pathways for the synthesis and degradation of several key metabolites, including amino acids, nucleic acids, vitamins, and hormones, require dioxygenase-catalyzed ring cleavage reactions. Extradiol dioxygenases also are intimately involved in the microbial degradation of many natural and synthetic aromatic compounds. The targeted enzymes catalyze the cleavage of aromatic rings in microbial pathways that degrade biphenyl, dibenzo-p-dioxin, dibenzofuran and their chlorinated analogs. This group of substrates includes a number of significant health risks. This project is part of a collaborative effort whose goals include elucidation of the mechanism of ring cleavage by extradiol dioxygenases, elucidation of the mechanism of irreversible inhibition of these enzymes by chlorinated metabolites, and development of microbial systems with an increased ability to degrade a broad range of detrimental aromatic and chloroaromatic pollutants.
| Colbert, Christopher L; Agar, Nathalie Y R; Kumar, Pravindra et al. (2013) Structural characterization of Pandoraea pnomenusa B-356 biphenyl dioxygenase reveals features of potent polychlorinated biphenyl-degrading enzymes. PLoS One 8:e52550 |
| Horsman, Geoff P; Ke, Jiyuan; Dai, Shaodong et al. (2006) Kinetic and structural insight into the mechanism of BphD, a C-C bond hydrolase from the biphenyl degradation pathway. Biochemistry 45:11071-86 |
| Bergdoll, M; Eltis, L D; Cameron, A D et al. (1998) All in the family: structural and evolutionary relationships among three modular proteins with diverse functions and variable assembly. Protein Sci 7:1661-70 |
