One the primary barriers to membrane protein structure determination by x-ray crystallography is obtaining high quality crystals. We propose two new technologies to improve our ability to obtain crystals of membrane proteins. Method I: We propose a general, high-throughput method to screen for compounds that bind to a target membrane protein. The compounds will stabilize and possibly rigidify the protein, improving the chances of crystallization. The screening method involves a simple test for protein stability. Method II: We proposed to utilize a polymerizing protein module to drive the crystallization of an attached membrane protein. We have demonstrated that the protein module can induce the crystallization of a wide variety of soluble proteins, including those otherwise refractory to crystallization. Moreover, the module is compatible with detergents and preliminary tests indicate that it can drive the crystallization of a transmembrane helix. We plan to further optimize this protein module and test its ability to produce crystals of a range of membrane proteins. Health Relevance: Many diseases are caused by aberrant protein function. Protein function is intimately tied to the elaborate three-dimensional shapes that proteins adopt. It is therefore an important medical goal to learn protein structures so that we can understand how they work and how we can intervene when their functions go awry in disease. This proposal seeks to increase the rate at which we can obtain this critical structural information.

Agency
National Institute of Health (NIH)
Institute
National Institute of General Medical Sciences (NIGMS)
Type
Research Project (R01)
Project #
5R01GM081783-03
Application #
7668354
Study Section
Special Emphasis Panel (ZRG1-BCMB-A (50))
Program Officer
Chin, Jean
Project Start
2007-09-15
Project End
2010-07-31
Budget Start
2009-08-01
Budget End
2010-07-31
Support Year
3
Fiscal Year
2009
Total Cost
$282,617
Indirect Cost
Name
University of California Los Angeles
Department
Genetics
Type
Schools of Medicine
DUNS #
092530369
City
Los Angeles
State
CA
Country
United States
Zip Code
90095
Hong, Heedeok; Chang, Yu-Chu; Bowie, James U (2013) Measuring transmembrane helix interaction strengths in lipid bilayers using steric trapping. Methods Mol Biol 1063:37-56
Hong, Heedeok; Bowie, James U (2011) Dramatic destabilization of transmembrane helix interactions by features of natural membrane environments. J Am Chem Soc 133:11389-98
Hong, Heedeok; Blois, Tracy M; Cao, Zheng et al. (2010) Method to measure strong protein-protein interactions in lipid bilayers using a steric trap. Proc Natl Acad Sci U S A 107:19802-7
Joh, Nathan H; Oberai, Amit; Yang, Duan et al. (2009) Similar energetic contributions of packing in the core of membrane and water-soluble proteins. J Am Chem Soc 131:10846-7
Oberai, Amit; Joh, Nathan H; Pettit, Frank K et al. (2009) Structural imperatives impose diverse evolutionary constraints on helical membrane proteins. Proc Natl Acad Sci U S A 106:17747-50
Hong, Heedeok; Joh, Nathan H; Bowie, James U et al. (2009) Methods for measuring the thermodynamic stability of membrane proteins. Methods Enzymol 455:213-36
Blois, Tracy M; Bowie, James U (2009) G-protein-coupled receptor structures were not built in a day. Protein Sci 18:1335-42
Blois, Tracy M; Hong, Heedeok; Kim, Tae H et al. (2009) Protein unfolding with a steric trap. J Am Chem Soc 131:13914-5
Plotkowski, Megan L; Kim, Sanguk; Phillips, Martin L et al. (2007) Transmembrane domain of myelin protein zero can form dimers: possible implications for myelin construction. Biochemistry 46:12164-73