TIP60 is a cellular lysine acetyltransferase that is getting increasing attention because of its role in the regulation of gene expression, in the response of a cell to DNA damage and as a tumor suppressor. TIP60 acetylates histones and critical cellular proteins involved in DNA damage response like p53, p21 and ATM kinase. In the previous cycle of this grant we discovered that two viruses use virally encoded oncoproteins, the E6 oncoprotein from human papilloma virus (HPV) and the E1b55K+E4Orf6 oncoproteins from adenovirus, to promote the degradation of the TIP60 tumor suppressor by proteasomes. The degradation of TIP60 is important for regulating the expression of viral genes and for modulating the cell's response to DNA damage. In parallel, we discovered that a cellular deubiquitinase, USP7, stabilizes TIP60 in human cells. We now propose to investigate whether the proteasome-mediated degradation of TIP60 can be exploited for therapy.
Aim 1 will test the hypothesis that the degradation of TIP60 by HPV E6 oncoprotein is mediated by direct protein-protein interactions between TIP60 and E6, and that the degradation leads to changes in cellular gene expression, cell transformation and the susceptibility to radiotherapy of HPV-infected cells and cancers. We will also test whether stabilization of TIP60 impairs the replicative life of the virusin keratinocytes in organotypic raft cultures and thus be a potential avenue of suppressing HPV infection.
Aim 2 will test the hypothesis that adenovirus oncoproteins degrade TIP60 by harnessing specific cellular proteins to create a virus-specific E3 ubiquitin ligase, and that this degradation alters viral gene expression programs to facilitate viral replication. This project advances our novel discoveries on the degradation of TIP60 by viral oncoproteins. Success in this project will enhance our understanding of HPV-infected cancers and identify a new mechanism by which adenovirus oncoproteins de-regulate the cellular machinery to facilitate viral infection.

Public Health Relevance

Protein modifications by the TIP60 acetyltranferase are emerging as being very important for the control of cell proliferation and for the response of a cell to DNA damage. This project will enhance our understanding of how human papilloma virus (HPV) causes cancers by degrading TIP60 and why these cancers are very sensitive to radiotherapy. It will discover a new group of cellular proteins that are hijacked by a common virus of the respiratory tract, adenovirus, to degrade TIP60 for the virus's own benefit. The entir project is a great example of how 'blue-skies' basic science grants funded by the NIH unexpectedly make discoveries that may improve the therapy of human disease.

Agency
National Institute of Health (NIH)
Institute
National Institute of General Medical Sciences (NIGMS)
Type
Research Project (R01)
Project #
5R01GM084465-07
Application #
9067538
Study Section
Cellular Signaling and Regulatory Systems Study Section (CSRS)
Program Officer
Willis, Kristine Amalee
Project Start
2008-09-26
Project End
2018-05-31
Budget Start
2016-06-01
Budget End
2017-05-31
Support Year
7
Fiscal Year
2016
Total Cost
Indirect Cost
Name
University of Virginia
Department
Biochemistry
Type
Schools of Medicine
DUNS #
065391526
City
Charlottesville
State
VA
Country
United States
Zip Code
22904
Kuscu, Canan; Kumar, Pankaj; Kiran, Manjari et al. (2018) tRNA fragments (tRFs) guide Ago to regulate gene expression post-transcriptionally in a Dicer-independent manner. RNA 24:1093-1105
Abbas, Tarek; Dutta, Anindya (2017) Regulation of Mammalian DNA Replication via the Ubiquitin-Proteasome System. Adv Exp Med Biol 1042:421-454
Kumar, Pankaj; Kuscu, Canan; Dutta, Anindya (2016) Biogenesis and Function of Transfer RNA-Related Fragments (tRFs). Trends Biochem Sci 41:679-689
Reon, Brian J; Dutta, Anindya (2016) Biological Processes Discovered by High-Throughput Sequencing. Am J Pathol 186:722-32
Kumar, Pankaj; Mudunuri, Suresh B; Anaya, Jordan et al. (2015) tRFdb: a database for transfer RNA fragments. Nucleic Acids Res 43:D141-5
Hong, Shiyuan; Dutta, Anindya; Laimins, Laimonis A (2015) The acetyltransferase Tip60 is a critical regulator of the differentiation-dependent amplification of human papillomaviruses. J Virol 89:4668-75
Kumar, Pankaj; Anaya, Jordan; Mudunuri, Suresh B et al. (2014) Meta-analysis of tRNA derived RNA fragments reveals that they are evolutionarily conserved and associate with AGO proteins to recognize specific RNA targets. BMC Biol 12:78
Negishi, Masamitsu; Wongpalee, Somsakul P; Sarkar, Sukumar et al. (2014) A new lncRNA, APTR, associates with and represses the CDKN1A/p21 promoter by recruiting polycomb proteins. PLoS One 9:e95216
Rosenbaum, Jean; Baek, Sung Hee; Dutta, Anindya et al. (2013) The emergence of the conserved AAA+ ATPases Pontin and Reptin on the signaling landscape. Sci Signal 6:mr1
Terai, Kenta; Shibata, Etsuko; Abbas, Tarek et al. (2013) Degradation of p12 subunit by CRL4Cdt2 E3 ligase inhibits fork progression after DNA damage. J Biol Chem 288:30509-14

Showing the most recent 10 out of 25 publications