Polycomb group (PcG) proteins are important epigenetic regulators of transcription repression and have long been under active investigation for their roles in Hox gene regulation, X-inactivation, and tumorigenesis in Drosophila and mammalian systems. Recent findings that PcG proteins are conserved in Tetrahymena make it possible to address some of the fundamental mechanisms of Polycomb repression with powerful genetic and biochemical tools available in the unicellular model system. Developmentally regulated heterochromatin formation occurs during the germline-somatic differentiation in Tetrahymena. It has been established that this is an RNAi-dependent PcG-mediated pathway. The proposed studies will explore the mechanism by which the PcG proteins are recruited by RNAi machinery, a mechanism likely to be conserved in higher eukaryotes. We will also examine the potential crosstalk between H3K27 methylation and H2A ubiquitylation, two conserved epigenetic marks deposited by PcG proteins. In particular, we will assess their concerted functions in transcription repression and probe the underlying mechanism. The proposed studies will significantly advance our knowledge for the function of PcG proteins in genome organization and transcription repression. Given that PcG proteins play critical roles in stem cell pluripotency, cell differentiation, and cell malignancy, the proposed studies will also have important implications in public health, including disease diagnosis and treatment. The project matches with the mission of the National Institute of General Medical Science (NIGMS) and is budgeted at $1,250,000 for a five-year period.

Public Health Relevance

Project Narrative Polycomb group proteins are involved in stem cell pluripotency, cell differentiation, and cell malignancy. The proposed studies will significantly advance our knowledge for the underlying mechanism, particularly the function of PcG proteins in genome organization and gene repression. This will have important implications in public health, including disease diagnosis and treatment.

Agency
National Institute of Health (NIH)
Institute
National Institute of General Medical Sciences (NIGMS)
Type
Research Project (R01)
Project #
5R01GM087343-02
Application #
8118228
Study Section
Molecular Genetics C Study Section (MGC)
Program Officer
Carter, Anthony D
Project Start
2010-08-01
Project End
2015-07-31
Budget Start
2011-08-01
Budget End
2012-07-31
Support Year
2
Fiscal Year
2011
Total Cost
$292,496
Indirect Cost
Name
University of Michigan Ann Arbor
Department
Pathology
Type
Schools of Medicine
DUNS #
073133571
City
Ann Arbor
State
MI
Country
United States
Zip Code
48109
Xiong, Jie; Gao, Shan; Dui, Wen et al. (2016) Dissecting relative contributions of cis- and trans-determinants to nucleosome distribution by comparing Tetrahymena macronuclear and micronuclear chromatin. Nucleic Acids Res 44:10091-10105
Papazyan, Romeo; Voronina, Ekaterina; Chapman, Jessica R et al. (2014) Methylation of histone H3K23 blocks DNA damage in pericentric heterochromatin during meiosis. Elife 3:e02996
Zhang, Chunchao; Gao, Shan; Molascon, Anthony J et al. (2014) Bioinformatic and proteomic analysis of bulk histones reveals PTM crosstalk and chromatin features. J Proteome Res 13:3330-7
Zhang, Chunchao; Gao, Shan; Molascon, Anthony J et al. (2014) Quantitative proteomics reveals histone modifications in crosstalk with H3 lysine 27 methylation. Mol Cell Proteomics 13:749-59
Zhang, Chunchao; Liu, Yifan; Andrews, Philip C (2013) Quantification of histone modifications using ยน?N metabolic labeling. Methods 61:236-43
Zhang, Chunchao; Molascon, Anthony J; Gao, Shan et al. (2013) Quantitative proteomics reveals that the specific methyltransferases Txr1p and Ezl2p differentially affect the mono-, di- and trimethylation states of histone H3 lysine 27 (H3K27). Mol Cell Proteomics 12:1678-88
Gao, Shan; Xiong, Jie; Zhang, Chunchao et al. (2013) Impaired replication elongation in Tetrahymena mutants deficient in histone H3 Lys 27 monomethylation. Genes Dev 27:1662-79
Song, Xiaoyuan; Bowen, Josephine; Miao, Wei et al. (2012) The nonhistone, N-terminal tail of an essential, chimeric H2A variant regulates mitotic H3-S10 dephosphorylation. Genes Dev 26:615-29
Gao, Shan; Liu, Yifan (2012) Intercepting noncoding messages between germline and soma. Genes Dev 26:1774-9
Xiong, Jie; Yuan, Dongxia; Fillingham, Jeffrey S et al. (2011) Gene network landscape of the ciliate Tetrahymena thermophila. PLoS One 6:e20124