A human gene will be studied in detail. The human genes for ribosomal DNA will be analyzed as members of a repetitious family of genes located on five non-homologous chromosome pairs. The ribosomal genes are members of an ancient evolutionary family whose primary transcript of 13 Kb is processed to mature 18, 28 and 5.8S RNA. This transcribed sequence is found within a very large 40 Kbp sequence which is tandemly repeated 20-30 times on the short arms of each of the five acrocentric chromosomes. Our work in progress has demonstrated that some sections of this 40 Kb repeat are rigidly conserved throughout the biological world. Other regions, such as that 3' to 28S sequence, are different in every species examined. The variable region not only shows variation between closely related species but between populations, individuals, within a set of chromosomes, and within a single chromosome. We will study the central questions of what factors contribute to human variation and what factors conserve gene structure. The changes which occur in a single gene are found in all of the genes on nonhomologous chromosomes. There is far greater similarity between genes on nonhomologous chromosomes than would be predicted by the diversity between genes on nonhomologous chromosomes than would be predicted by the diversity between closely related species. This concerted evolution indicates that there is recombination and conversion between the genes on nonhomologous chromosomes. We will examine the DNA structure which is involved in recombination and host factors which mediate or prevent variation. The genes will be studied by mapping, base sequencing and analyis of secondary structure. This study gives us the opportunity to view the evolution of a large family of genes over the entire evolutionary span. The genes will be compared to our sequences of other primates and with published sequences of lower organisms. The recombination of genes on nonhomologous chromosomes will be stressed as a cause of human birth defects.

Agency
National Institute of Health (NIH)
Institute
Eunice Kennedy Shriver National Institute of Child Health & Human Development (NICHD)
Type
Research Project (R01)
Project #
5R01HD016930-05
Application #
3314058
Study Section
Mammalian Genetics Study Section (MGN)
Project Start
1983-04-01
Project End
1988-06-30
Budget Start
1987-04-01
Budget End
1988-06-30
Support Year
5
Fiscal Year
1987
Total Cost
Indirect Cost
Name
University of Pennsylvania
Department
Type
Schools of Medicine
DUNS #
042250712
City
Philadelphia
State
PA
Country
United States
Zip Code
19104
Gonzalez, I L; Sylvester, J E; Smith, T F et al. (1990) Ribosomal RNA gene sequences and hominoid phylogeny. Mol Biol Evol 7:203-19
Sylvester, J E; Petersen, R; Schmickel, R D (1989) Human ribosomal DNA: novel sequence organization in a 4.5-kb region upstream from the promoter. Gene 84:193-6
Gorski, J L; Gonzalez, I L; Schmickel, R D (1987) The secondary structure of human 28S rRNA: the structure and evolution of a mosaic rRNA gene. J Mol Evol 24:236-51
Gonzalez, I L; Schmickel, R D (1986) The human 18S ribosomal RNA gene: evolution and stability. Am J Hum Genet 38:419-27
Gonzalez, I L; Gorski, J L; Campen, T J et al. (1985) Variation among human 28S ribosomal RNA genes. Proc Natl Acad Sci U S A 82:7666-70
Jain, S K; Crampton, J; Gonzalez, I L et al. (1985) Complementarity between ferritin H mRNA and 28 S ribosomal RNA. Biochem Biophys Res Commun 131:863-7