The application of a new zinc-mediated carbenoid reaction to the preparation of peptide isosteres is described. This new method will be applicable to a wide variety of amino acid systems and will facilitate the preparation of inhibitors to a wide variety of viral proteases. The human cytomegalovirus (HCMV) serine protease is an attractive target and is specifically addressed in this study. Gamma-Keto esters which are incorporated into peptide skeletons have found great utility as mimics of a scissile peptide bond. These gamma-keto esters will be prepared from beta-keto esters in a single step through treatment with ethyl(iodomethyl)zinc. A two-step protocol is described in which beta-keto esters are incorporated into peptide fragments and then chain-extended to the corresponding gamma-keto esters. The preparation of a wide variety of peptide isosteric replacements should be possible through this methodology. A key feature of the study is the reactivity of the Reformatsky-like intermediate which will allow the incorporation of a variety of side chains that mimic the P1'-side chain of the peptide fragment. Stereocontrol of this side chain is essential to the full utilization of the zinc-mediated methodology. The application of this methodology to hydroxyethylene and difluoroketomethylene isostere systems is described. The approach to the difluoroketomethylene isostere is rapid and, if successful, will become the method of choice for the preparation of this isostere. The preparation of a novel isosteric system, gamma-keto phosphonates as part of an amino acid skeleton, is described. The relationship between peptide chemistry and solid-phase synthesis has continued to grow, mandating that methods which are proposed to impact peptide chemistry accommodate this relationship. The first practical approach to ketomethylene isostere generation on a solid support. Efforts will be made to incorporate this methodology onto a solid support in such a capacity as to make it compatible with peptide solid phase techniques.

Agency
National Institute of Health (NIH)
Institute
National Institute of General Medical Sciences (NIGMS)
Type
Academic Research Enhancement Awards (AREA) (R15)
Project #
1R15GM060967-01
Application #
6085379
Study Section
Medicinal Chemistry Study Section (MCHA)
Program Officer
Schwab, John M
Project Start
2000-04-01
Project End
2004-07-31
Budget Start
2000-04-01
Budget End
2004-07-31
Support Year
1
Fiscal Year
2000
Total Cost
$138,200
Indirect Cost
Name
University of New Hampshire
Department
Chemistry
Type
Schools of Engineering
DUNS #
111089470
City
Durham
State
NH
Country
United States
Zip Code
03824
Jacobine, Alexander M; Puchlopek, Angela L A; Zercher, Charles K et al. (2012) Tandem chain extension-Mannich reaction: an approach to ?-proline derivatives. Tetrahedron 68:7799-7805
Aiken, Karelle S; Eger, Wilhelm A; Williams, Craig M et al. (2012) A combined DFT and NMR investigation of the zinc organometallic intermediate proposed in the syn-selective tandem chain extension-aldol reaction of ?-keto esters. J Org Chem 77:5942-55
Mazzone, Jennifer R; Zercher, Charles K (2012) Syntheses of papyracillic acids: application of the tandem chain extension-acylation reaction. J Org Chem 77:9171-8
Thorn, Karina; Nielsen, Carsten Uhd; Jakobsen, Palle et al. (2011) The tandem chain extension aldol reaction used for synthesis of ketomethylene tripeptidomimetics targeting hPEPT1. Bioorg Med Chem Lett 21:4597-601
Eger, Wilhelm A; Zercher, Charles K; Williams, Craig M (2010) A mechanistic investigation into the zinc carbenoid-mediated homologation reaction by DFT methods: is a classical donor-acceptor cyclopropane intermediate involved? J Org Chem 75:7322-31
Lin, Weimin; Theberge, Cory R; Henderson, Timothy J et al. (2009) Stereoselective formation of a functionalized dipeptide isostere by zinc carbenoid-mediated chain extension. J Org Chem 74:645-51
Pu, Qinglin; Wilson, Emerald; Zercher, Charles K (2008) Tandem Chain Extension-Iodomethylation Reactions: Formation of alpha-Functionalized gamma-Keto Carbonyls. Tetrahedron 64:8045-8051
Jacobine, Alexander M; Lin, Weimin; Walls, Bethany et al. (2008) Formation of gamma-lactones through CAN-mediated oxidative cleavage of hemiketals. J Org Chem 73:7409-12
Lin, Weimin; Zercher, Charles K (2007) Formal synthesis of (+)-brefeldin A: application of a zinc-mediated ring expansion reaction. J Org Chem 72:4390-5
Ronsheim, Matthew D; Zercher, Charles K (2003) Zinc carbenoid-mediated chain extension: preparation of alpha,beta-unsaturated-gamma-keto esters and amides. J Org Chem 68:4535-8

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