Proteins are typically synthesized with 20 amino acids, yet over 300 amino acids are found in proteins as a result of posttranslational modifications (PTMs). These natural noncanonical amino acids (ncAAs) modulate protein function and control fundamental cellular processes. Satisfactory genetic encoding of ncAAs requires the development of efficient and accurate aminoacyl-tRNA formation and delivery to the ribosome by design of tRNAs, tRNA synthetases, and elongation factors that constitute orthogonal translation systems (OTSs). While some ncAAs have been genetically encoded (e.g., N-acetyllysine, phosphoserine (Sep)), OTSs have not been established for a number of critical PTMs. The overall goal of this proposal is to rewire translation by developing OTSs for facile and precise production of natural and engineered proteins containing naturally occurring and synthetic ncAAs. These general goals will be realized in three specific areas of the proposed work. (1) Selenium, in the form of selenocysteine (Sec), is an essential trace element for human health, exhibiting many advantageous chemical properties with its misincorporation implicated in many disease states. We will engineer efficient site-directed insertion of Sec and investigate the effects its insertion along with its precursor Sep into several enzymes of industrial and medical interest. (2) While the genetic code was once thought to be universal, natural codon reassignments in nature are now known to be widespread. We will couple bioinformatic analysis with our knowledge of tRNA identity elements to both reveal novel genetic codes and better characterize the role of this variability in nature. Additionally, we will use long-term evolution to produce an organism with a new genetic code utilizing synthetic amino acids. (3) We plan to create aminoacyl-tRNA synthetases for efficient synthesis of ncAA- tRNA for a series of phosphoamino acids and chemically reactive synthetic amino acids. Given the critical role of phosphorylation in cell signaling and the success of kinase inhibitors against cancer cells, and based on our success establishing an OTS for phosphoserine, we propose to establish OTSs for additional phosphoamino acids and their non-hydrolyzable analogs. Incorporation of chemically reactive amino acids will provide a robust tool to introduce PTMs, biophysical probes, or other valuable residues into a protein of interest. The proposed work is significant because the ability to produce, purify, biochemically and structurally char- acterize proteins containing ncAAs at defined sites is essential for elucidation of fundamental cellular processes and for construction of new tools for protein design. The innovation of the proposed work is to genetically encode these biologically relevant ncAAs, and provide efficient OTSs for biochemical and biomedical researchers to help unravel the complex network of PTMs and their role in biotechnology and human health.
The unexpected diversity of aminoacyl-tRNA synthesis (processes that maintain the coding relationship between DNA and protein) opens previously inaccessible frontiers in the biology of translation and post-translational protein modifications, the malfunction of which is linked to several human diseases including cancer, neurodegenerative and metabolic disorders. The proposed projects aim to design new routes for aminoacyl- tRNA formation and create orthogonal translation systems to site-specifically incorporate natural non-canonical amino acids (ncAAs), which is relevant to human health because the ability to produce proteins containing ncAAs at defined sites will allow elucidation of molecular mechanisms for basic cellular processes including apoptosis, gene expression, and cellular signaling networks in healthy and diseased human cells. These studies will ultimately provide valuable pharmacological targets and novel therapeutic interventions for a variety of human diseases including cancers and genetic disorders.
| Mukai, Takahito; Sevostyanova, Anastasia; Suzuki, Tateki et al. (2018) A Facile Method for Producing Selenocysteine-Containing Proteins. Angew Chem Int Ed Engl 57:7215-7219 |
| Crnkovi?, Ana; Vargas-Rodriguez, Oscar; Merkuryev, Anna et al. (2018) Effects of Heterologous tRNA Modifications on the Production of Proteins Containing Noncanonical Amino Acids. Bioengineering (Basel) 5: |
| Fu, Xian; Crnkovi?, Ana; Sevostyanova, Anastasia et al. (2018) Designing seryl-tRNA synthetase for improved serylation of selenocysteine tRNAs. FEBS Lett 592:3759-3768 |
| Melnikov, Sergey V; Manakongtreecheep, Kasidet; Rivera, Keith D et al. (2018) Muller's Ratchet and Ribosome Degeneration in the Obligate Intracellular Parasites Microsporidia. Int J Mol Sci 19: |
| Melnikov, Sergey V; van den Elzen, Antonia; Stevens, David L et al. (2018) Loss of protein synthesis quality control in host-restricted organisms. Proc Natl Acad Sci U S A 115:E11505-E11512 |
| Fu, Xian; Söll, Dieter; Sevostyanova, Anastasia (2018) Challenges of site-specific selenocysteine incorporation into proteins by Escherichia coli. RNA Biol 15:461-470 |
| Kunjapur, Aditya M; Stork, Devon A; Kuru, Erkin et al. (2018) Engineering posttranslational proofreading to discriminate nonstandard amino acids. Proc Natl Acad Sci U S A 115:619-624 |
| Hoffman, Kyle S; Crnkovi?, Ana; Söll, Dieter (2018) Versatility of Synthetic tRNAs in Genetic Code Expansion. Genes (Basel) 9: |
| Melnikov, Sergey V; Rivera, Keith D; Ostapenko, Denis et al. (2018) Error-prone protein synthesis in parasites with the smallest eukaryotic genome. Proc Natl Acad Sci U S A 115:E6245-E6253 |
| Mukai, Takahito; Sevostyanova, Anastasia; Suzuki, Tateki et al. (2018) [A facile method for producing selenocysteine-containing proteins]. Angew Chem Weinheim Bergstr Ger 130:7333-7337 |
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