EXCEED THE SPACE PROVIDED. This research will develop enzymatic methods for the synthesis of bioactive molecules. It will focus on the following programs: 1. Develop catalytic asymmetric aldol condensations based on aldolases and variants prepared by directed evolution. 2. Develop synthesis of O- and AMinked glycoproteins in vitro by enzymatic glycopeptide ligation and in vivo in E. co//through directed evolution of tRNA and aminoacyl tRNA synthase pair. 3. Develop chemo-enzymatic methods based on glycosyltransferases reaction and programmable one-pot glycosylations for the synthesis of heparin sulfates, oligosaccharides, and glycoproteins. 4. Use genetic engineering to improve the production and specificity of synthetically useful enzymes, particularly subtilisin variants, aminoacyl tRNA synthases, sulfotransferases, glycosyltransferases, and aldolases. 5. Chemo-enzymatic synthesis of important synthons and glycoconjugates. 6. Develop new methods using enzyme products for synthesis of natural products and designed molecules, including: glycosidase and glycosyltransferase inhibitors, oligosaccharides vaccines for breast cancer and AIDS, and antibiotics. 7. Develop small D-peptides to target cell-surface D-carbohydrate epitopes using mirror image phage display (e.g., using the i-sugars prepared by the evolved aldolases to synthesize the mirror image forms (theL-sugar) of the cancer epitopes Globo H and Sialyl Tn for use in identification of L-peptides. The corresponding D-peptide will be prepared via solid phase. 8. Provide other enzymatic and non-enzymatic reactions, NMR, mass spectrometry, proteomic, glycoaarray, and modeling techniques to support these efforts in synthesis and molecular design. Significant contributions in the areas of biomedicine and synthetic organic chemistry are expected. These developments may facilitate the discovery and development of new therapeutic agents.

Agency
National Institute of Health (NIH)
Institute
National Institute of General Medical Sciences (NIGMS)
Type
Method to Extend Research in Time (MERIT) Award (R37)
Project #
4R37GM044154-17
Application #
6987321
Study Section
Special Emphasis Panel (NSS)
Program Officer
Jones, Warren
Project Start
1998-03-01
Project End
2010-11-30
Budget Start
2005-12-16
Budget End
2006-11-30
Support Year
17
Fiscal Year
2006
Total Cost
$420,167
Indirect Cost
Name
Scripps Research Institute
Department
Type
DUNS #
781613492
City
La Jolla
State
CA
Country
United States
Zip Code
92037
Lewis, Jared C; Bastian, Sabine; Bennett, Clay S et al. (2009) Chemoenzymatic elaboration of monosaccharides using engineered cytochrome P450BM3 demethylases. Proc Natl Acad Sci U S A 106:16550-5
Hanson, Sarah R; Culyba, Elizabeth K; Hsu, Tsui-Ling et al. (2009) The core trisaccharide of an N-linked glycoprotein intrinsically accelerates folding and enhances stability. Proc Natl Acad Sci U S A 106:3131-6
Wu, Douglass; Fujio, Masakazu; Wong, Chi-Huey (2008) Glycolipids as immunostimulating agents. Bioorg Med Chem 16:1073-83
Bennett, Clay; Dean, Stephen; Payne, Richard et al. (2008) Sugar-Assisted Glycopeptide Ligation with Complex Oligosaccharides: Scope and Limitations. J Am Chem Soc :
Yang, Yu-Ying; Ficht, Simon; Brik, Ashraf et al. (2007) Sugar-assisted ligation in glycoprotein synthesis. J Am Chem Soc 129:7690-701
Hanson, Sarah R; Hsu, Tsui-Ling; Weerapana, Eranthie et al. (2007) Tailored glycoproteomics and glycan site mapping using saccharide-selective bioorthogonal probes. J Am Chem Soc 129:7266-7
Polat, Tulay; Wong, Chi-Huey (2007) Anomeric reactivity-based one-pot synthesis of heparin-like oligosaccharides. J Am Chem Soc 129:12795-800
Sugiyama, Masakazu; Hong, Zhangyong; Greenberg, William A et al. (2007) In vivo selection for the directed evolution of L-rhamnulose aldolase from L-rhamnulose-1-phosphate aldolase (RhaD). Bioorg Med Chem 15:5905-11
Hanson, Sarah R; Whalen, Lisa J; Wong, Chi-Huey (2006) Synthesis and evaluation of general mechanism-based inhibitors of sulfatases based on (difluoro)methyl phenyl sulfate and cyclic phenyl sulfamate motifs. Bioorg Med Chem 14:8386-95
Chapman, Eli; Bryan, Marian C; Wong, Chi-Huey (2003) Mechanistic studies of beta-arylsulfotransferase IV. Proc Natl Acad Sci U S A 100:910-5

Showing the most recent 10 out of 11 publications