The primary aim of this project is to increase minority participation in biomedical research through a broadly based technology transfer program of modern computational bioinformatics techniques used in biomedical research to selected minority institutions, their faculty members, and their graduate students. The proposed program will create new bioinformatics programs at two minority institutions each year and provide significant bioinformatics training at a number of other minority institutions. The proposed program focuses around training in bioinformatics and sequence analysis techniques that allow scientists to make effective use of the vast amount of information being produced by various genome sequencing, gene expression, and macromolecular molecular sequence determination projects around the world. The training will also include an introduction to molecular mechanics and dynamics which will allow the trained scientists to make effective use of homology modeling in order to exploit the structural information available from the protein data bank and to effectively use these powerful techniques for investigating the interplay of sequence, structure, and function of biological macromolecules. The proposed technology transfer program involves three components designed to provide both immediate and long-term increases in the research opportunities available to scientists at minority institutions.
The aims for each of the three components are to: create a multidisciplinary core group of faculty at each institution with knowledge and interest in bioinformatics; establish bioinformatics as part of the graduate curriculum at selected institutions; and integrate bioinformatics procedures into the repertoire of research tools used in the laboratories of specific faculty at the selected institutions. The components are: 1) A two week summer workshop in bioinformatics for a faculty teams from minority institutions; 2) Introducing bioinformatics as a permanent part of the curriculum at two minority campuses every year by cooperative teaching of an bioinformatics course with members of the above faculty teams; and 3) A five week research internship for graduate students from the minority institutions who have completed the bioinformatics course on their campus in a project involving at least one of the faculty team members from the minority institution and Pittsburgh Supercomputing Center (PSC) staff members.

Agency
National Institute of Health (NIH)
Institute
National Institute of General Medical Sciences (NIGMS)
Type
MARC Ancillary Training Activities (Grant) (NIGMS) (T36)
Project #
1T36GM008789-01A1
Application #
6320645
Study Section
Minority Programs Review Committee (MPRC)
Program Officer
Toliver, Adolphus
Project Start
2001-09-30
Project End
2004-09-29
Budget Start
2001-09-30
Budget End
2002-09-29
Support Year
1
Fiscal Year
2001
Total Cost
$354,876
Indirect Cost
Name
Carnegie-Mellon University
Department
Biostatistics & Other Math Sci
Type
Schools of Arts and Sciences
DUNS #
052184116
City
Pittsburgh
State
PA
Country
United States
Zip Code
15213
Clark, Louis; Leatherby, Danielle; Krilich, Elizabeth et al. (2018) In silico analysis of class I adenylate-forming enzymes reveals family and group-specific conservations. PLoS One 13:e0203218
Montes-Rodríguez, Ingrid M; Rodríguez-Pou, Yesenia; González-Méndez, Ricardo R et al. (2018) Characterization of Histone Genes from the Bivalve Lucina Pectinata. Int J Environ Res Public Health 15:
Rodriguez, Yacidzohara; Gonzalez-Mendez, Ricardo R; Cadilla, Carmen L (2016) Evolution of the Twist Subfamily Vertebrate Proteins: Discovery of a Signature Motif and Origin of the Twist1 Glycine-Rich Motifs in the Amino-Terminus Disordered Domain. PLoS One 11:e0161029
Gonzalez-Velazquez, Waleska; Gonzalez-Mendez, Ricardo; Rodriguez-del Valle, Nuri (2012) Characterization and ligand identification of a membrane progesterone receptor in fungi: existence of a novel PAQR in Sporothrix schenckii. BMC Microbiol 12:194
Isokpehi, Raphael D; Simmons, Shaneka S; Cohly, Hari H P et al. (2011) Identification of drought-responsive universal stress proteins in viridiplantae. Bioinform Biol Insights 5:41-58
Udensi, Udensi K; Cohly, Hari H P; Graham-Evans, Barbara E et al. (2011) Aberrantly Expressed Genes in HaCaT Keratinocytes Chronically Exposed to Arsenic Trioxide. Biomark Insights 6:7-16
Rodriguez-Caban, Jorge; Gonzalez-Velazquez, Waleska; Perez-Sanchez, Lizaida et al. (2011) Calcium/calmodulin kinase1 and its relation to thermotolerance and HSP90 in Sporothrix schenckii: an RNAi and yeast two-hybrid study. BMC Microbiol 11:162
Perez-Sanchez, Lizaida; Gonzalez, Elizabeth; Colon-Lorenzo, Emilee E et al. (2010) Interaction of the heterotrimeric G protein alpha subunit SSG-1 of Sporothrix schenckii with proteins related to stress response and fungal pathogenicity using a yeast two-hybrid assay. BMC Microbiol 10:317
Isokpehi, Raphael D; Cohly, Hari H P; Anyanwu, Matthew N et al. (2010) Candidate single nucleotide polymorphism markers for arsenic responsiveness of protein targets. Bioinform Biol Insights 4:99-111
Ropelewski, Alexander J; Nicholas, Hugh B; Gonzalez Mendez, Ricardo R (2010) MPI-PHYLIP: parallelizing computationally intensive phylogenetic analysis routines for the analysis of large protein families. PLoS One 5:e13999

Showing the most recent 10 out of 14 publications