The second phase of NIH Common Fund 4D Nucleome Network Organizational Hub Abstract The second phase of the 4DN program requires an efficient organizational center to synergize the activities of all the funded teams and integrate the research products. Accordingly, the 4DN Organizational Hub is proposed to: (1) coordinate and integrate the efforts of all the funded projects, (2) build an efficient consortium infrastructure to serve as a center for the collaborative efforts, and (3) provide the 4DN web portal as a central resource gateway to access all the 4DN-Network generated tools, policies, guidelines, protocols, reagents, cell lines, and as a central hub for the outreach activities. Our major deliverables are: (1) an organizational structure composed of a steering committee and problem-solving working groups with a clear report chain to enable effective communications and decision-making processes, establish co-organizers and schedule, clarify action items, and ensure execution of the action items; (2) 4DN Web Portal (www.4dnucleome.org/), which is the always up-to-date community-wide resource and point of access for all data, protocols, reagents, resources, and methods; (3) 4DN internal wiki, the central organized resource for all teams, centers, and working groups to document internal progresses. (4) 4DN annual meetings, including the kick-off meeting in winter 2020 and the subsequent annual meetings and 4DN-ASCB (American Society of Cell Biology) satellite meetings; (5) 4DN outreach workshops at Keystone symposia and American Society of Human Genetics (ASHG) meetings, and on 4DN YouTube channel.

Public Health Relevance

The second phase of NIH Common Fund 4D Nucleome Network Organizational Hub Narrative The second phase of the 4DN program will study chromatin dynamics in live cells, complex tissues, and disease conditions. The 4DN Organizational Hub is proposed to: (1) coordinate and integrate the efforts of all the funded projects, (2) build an efficient consortium infrastructure to serve as a center for the collaborative efforts, and (3) provide the 4DN web portal as a central resource gateway to access all the 4DN-Network generated tools, policies, guidelines, protocols, reagents, and cell lines.

Agency
National Institute of Health (NIH)
Institute
National Cancer Institute (NCI)
Type
Research Project--Cooperative Agreements (U01)
Project #
2U01CA200147-06
Application #
10130130
Study Section
Special Emphasis Panel (ZRG1)
Program Officer
Fingerman, Ian M
Project Start
2015-09-01
Project End
2025-08-31
Budget Start
2020-09-15
Budget End
2021-08-31
Support Year
6
Fiscal Year
2020
Total Cost
Indirect Cost
Name
University of California, San Diego
Department
Engineering (All Types)
Type
Schools of Arts and Sciences
DUNS #
804355790
City
La Jolla
State
CA
Country
United States
Zip Code
92093
Calandrelli, Riccardo; Wu, Qiuyang; Guan, Jihong et al. (2018) GITAR: An Open Source Tool for Analysis and Visualization of Hi-C Data. Genomics Proteomics Bioinformatics :
Sabath, Niv; Vilborg, Anna; Steitz, Joan A et al. (2018) Caution needs to be taken when assigning transcription start sites to ends of protein-coding genes: a rebuttal. Hum Genomics 12:32
Cao, Xiaoyi; Yan, Zhangming; Wu, Qiuyang et al. (2018) GIVE: portable genome browsers for personal websites. Genome Biol 19:92
Chen, Weizhong; Yan, Zhangming; Li, Simin et al. (2018) RNAs as Proximity-Labeling Media for Identifying Nuclear Speckle Positions Relative to the Genome. iScience 4:204-215
Zheng, Xiaoqi; Zhong, Sheng (2017) From structure to function, how bioinformatics help to reveal functions of our genomes. Genome Biol 18:183
Dekker, Job; Belmont, Andrew S; Guttman, Mitchell et al. (2017) The 4D nucleome project. Nature 549:219-226
Mukund, Kavitha; Subramaniam, Shankar (2017) Co-expression Network Approach Reveals Functional Similarities among Diseases Affecting Human Skeletal Muscle. Front Physiol 8:980