Intestine development is a highly complex process that involves reciprocal signaling between the intestinal epithelium and the underlying mesenchyme in order to drive the morphogenetic process giving rise to the stereotypical crypt-villus architecture of the fully functional, adult intestine. However, almost nothing is known about the cellular constituents present in the human intestine that comprise the intestinal stem cell (ISC) niche, and even less is understood about how these cells may functionally regulate human ISCs. Improving this gap in knowledge is critical for our understanding of the normal human intestine, and will also lay the groundwork for understanding the molecular and cellular basis of disease and for developing novel therapies aimed at stimulating repair and regeneration. The goal of this proposal is to add fundamental new knowledge of human intestinal biology by interrogating the ISC niche across the human lifespan, from development through adulthood, and to understand how niche cells function to support human ISCs, intestinal maturation and intestinal function.

Public Health Relevance

The gut epithelium, which is supported by a self-renewing population of intestinal stem cells (ISCs), has the complex task of absorbing nutrients while managing constant bombardment from food and bacterial antigens, acting as the first physical and immunological barrier, and, in the event that the epithelial barrier is compromised or disrupted, the underlying immune system can be triggered, leading to inflammation, damage and disease. Yet, our understanding of the cellular heterogeneity of the human intestine, and the mechanisms by which the human intestinal epithelium is regulated is extremely limited and is largely inferred from animal models. This proposal will leverage recent technological advances in single cell genomic sequencing, along with advances isolating, growing, manipulating and interrogating primary human tissue derived- and pluripotent stem cell-derived organoid models to interrogate niche cells and niche factors that regulate human ISCs.

Agency
National Institute of Health (NIH)
Institute
National Institute of Diabetes and Digestive and Kidney Diseases (NIDDK)
Type
Research Project--Cooperative Agreements (U01)
Project #
2U01DK103141-06
Application #
9827294
Study Section
Special Emphasis Panel (ZDK1)
Program Officer
Saslowsky, David E
Project Start
2014-09-01
Project End
2024-08-31
Budget Start
2019-09-05
Budget End
2020-08-31
Support Year
6
Fiscal Year
2019
Total Cost
Indirect Cost
Name
University of Michigan Ann Arbor
Department
Internal Medicine/Medicine
Type
Schools of Medicine
DUNS #
073133571
City
Ann Arbor
State
MI
Country
United States
Zip Code
48109
Han, Xu; Lee, Allen; Huang, Sha et al. (2018) Lactobacillus rhamnosus GG prevents epithelial barrier dysfunction induced by interferon-gamma and fecal supernatants from irritable bowel syndrome patients in human intestinal enteroids and colonoids. Gut Microbes :1-18
Srivillibhuthur, Manasa; Warder, Bailey N; Toke, Natalie H et al. (2018) TFAM is required for maturation of the fetal and adult intestinal epithelium. Dev Biol 439:92-101
Dame, Michael K; Attili, Durga; McClintock, Shannon D et al. (2018) Identification, isolation and characterization of human LGR5-positive colon adenoma cells. Development 145:
Tsai, Yu-Hwai; Czerwinski, Michael; Wu, Angeline et al. (2018) A Method for Cryogenic Preservation of Human Biopsy Specimens and Subsequent Organoid Culture. Cell Mol Gastroenterol Hepatol 6:218-222.e7
Spence, Jason R (2018) Taming the Wild West of Organoids, Enteroids, and Mini-Guts. Cell Mol Gastroenterol Hepatol 5:159-160
Cruz-Acuña, Ricardo; Quirós, Miguel; Huang, Sha et al. (2018) Publisher Correction: PEG-4MAL hydrogels for human organoid generation, culture, and in vivo delivery. Nat Protoc :
Cruz-Acuña, Ricardo; Quirós, Miguel; Huang, Sha et al. (2018) PEG-4MAL hydrogels for human organoid generation, culture, and in vivo delivery. Nat Protoc 13:2102-2119
Banerjee, Kushal K; Saxena, Madhurima; Kumar, Namit et al. (2018) Enhancer, transcriptional, and cell fate plasticity precedes intestinal determination during endoderm development. Genes Dev 32:1430-1442
Kim, Ge-Ah; Spence, Jason R; Takayama, Shuichi (2017) Bioengineering for intestinal organoid cultures. Curr Opin Biotechnol 47:51-58
Chin, Alana M; Hill, David R; Aurora, Megan et al. (2017) Morphogenesis and maturation of the embryonic and postnatal intestine. Semin Cell Dev Biol 66:81-93

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