Based on the lessons learned from our project on carbocyclic nucleosides (Z01 BC 006174) regarding the mechanism of """"""""delayed chain termination"""""""", two lines of investigation have been implemented this year to exploit each of the critical parameters necessary for efficient activity against HIV: (1) attachment of 4'-alkyl groups (methyl and ethyl) to a 2'-deoxyribose moiety; and (2) incorporation of a double bond onto the carbocyclic moiety of bicyclo[3.1.0]hexane nucleosides converting them into flat bicyclo[3.1.0]hex-3-ene nucleosides. Ring flatness is a property deemed essential for efficient phosphorylation by cellular kinases. Progress in these two areas is highlighted: (1) Synthesis of the thymidine series bearing 4'-methyl and ethyl groups was successfully completed. The 4'-methyl analogue showed excellent properties as a delayed chain terminator when used in vitro against HIV-RT as a 5'-triphosphate, but failed to be recognized by cellular kinases. The synthesis of an analogous series with adenine as nucleobase is in progress; and (2) The synthesis of the first South analogue with a flat bicyclo[3.1.0]hex-3-ene containing thymi

Agency
National Institute of Health (NIH)
Institute
Division of Basic Sciences - NCI (NCI)
Type
Intramural Research (Z01)
Project #
1Z01BC006173-21
Application #
7337934
Study Section
(LMC)
Project Start
Project End
Budget Start
Budget End
Support Year
21
Fiscal Year
2006
Total Cost
Indirect Cost
Name
Basic Sciences
Department
Type
DUNS #
City
State
Country
United States
Zip Code
Russ, Pamela L; Gonzalez-Moa, Maria J; Vu, B Christie et al. (2009) North- and south-bicyclo[3.1.0]hexene nucleosides: the effect of ring planarity on anti-HIV activity. ChemMedChem 4:1354-63
Marquez, Victor E; Sun, Guangyu; Siddiqui, Maqbool A et al. (2008) What are the consequences of freezing the anomeric effect in nucleosides? Nucleic Acids Symp Ser (Oxf) :543-4
Siddiqui, Maqbool A; Marquez, Victor E (2007) The triphosphate of beta-D-4'-C-ethynyl-2',3'-dideoxycytidine is the preferred enantiomer substrate for HIV reverse transcriptase. Bioorg Med Chem 15:283-7
Boyer, Paul L; Julias, John G; Marquez, Victor E et al. (2005) Fixed conformation nucleoside analogs effectively inhibit excision-proficient HIV-1 reverse transcriptases. J Mol Biol 345:441-50
Siddiqui, Maqbool A; Hughes, Stephen H; Boyer, Paul L et al. (2004) A 4'-C-ethynyl-2',3'-dideoxynucleoside analogue highlights the role of the 3'-OH in anti-HIV active 4'-C-ethynyl-2'-deoxy nucleosides. J Med Chem 47:5041-8
Choi, Yongseok; Sun, Guangyu; George, Clifford et al. (2003) Synthesis and conformational analysis of a locked analogue of carbovir built on a bicyclo[3.1.0]hex-2-enyl template. Nucleosides Nucleotides Nucleic Acids 22:2077-91
Choi, Yongseok; George, Clifford; Comin, Maria J et al. (2003) A conformationally locked analogue of the anti-HIV agent stavudine. An important correlation between pseudorotation and maximum amplitude. J Med Chem 46:3292-9