Our recent progress includes: (1)Human hepatocarcinogenes is as a multi-step process starting from dysplastic lesions to early carcinoma (eHCC) that ultimately progresses to HCC (pHCC). The probability of malignant transformation of the pre-neoplastic lesions, which often co-exist with eHCC and pHCC in an individual patient, is not defined. Therefore, definition of the sequential molecular events leading to HCC is urgently needed and represents a major challenge in the clinical management of patients at risk. This study is the first to apply integrative transcriptome sequencing to tumor free-surrounding liver (n=7), low (n=4) and high-grade (n=9) dysplastic lesions, eHCC (n=5) and pHCC (n=3) from 8 HCC patients with hepatitis B infection. We report that the transcriptomes of early lesions including eHCC were surprisingly homogenous despite a progressive increase in immune response and proliferation. Activation of prognostic adverse signaling pathways occurred only late during hepatocarcinogenesis and was centered on TGFbeta, WNT, NOTCH and EMTrelated genes reflecting the molecular diversity of pHCC. We further identify IGFALS as a key genetic determinant which is preferentially down-regulated in pHCC. Our results define new hallmarks in molecular stratification and therapy options for patients at risk for HCC.

Agency
National Institute of Health (NIH)
Institute
National Cancer Institute (NCI)
Type
Investigator-Initiated Intramural Research Projects (ZIA)
Project #
1ZIABC011173-06
Application #
8937991
Study Section
Project Start
Project End
Budget Start
Budget End
Support Year
6
Fiscal Year
2014
Total Cost
Indirect Cost
Name
Basic Sciences
Department
Type
DUNS #
City
State
Country
Zip Code
Marquardt, Jens U; Thorgeirsson, Snorri S (2014) Next-generation genomic profiling of hepatocellular adenomas: a new era of individualized patient care. Cancer Cell 25:409-11
Andersen, Jesper B; Thorgeirsson, Snorri S (2014) A perspective on molecular therapy in cholangiocarcinoma: present status and future directions. Hepat Oncol 1:143-157
Marquardt, Jens U; Seo, Daekwan; Andersen, Jesper B et al. (2014) Sequential transcriptome analysis of human liver cancer indicates late stage acquisition of malignant traits. J Hepatol 60:346-353
Matter, Matthias S; Decaens, Thomas; Andersen, Jesper B et al. (2014) Targeting the mTOR pathway in hepatocellular carcinoma: current state and future trends. J Hepatol 60:855-65
Staib, Frank; Krupp, Markus; Maass, Thorsten et al. (2014) CellMinerHCC: a microarray-based expression database for hepatocellular carcinoma cell lines. Liver Int 34:621-31
Marquardt, Jens U; Thorgeirsson, Snorri S (2014) SnapShot: Hepatocellular carcinoma. Cancer Cell 25:550.e1
Jia, Jinping; Parikh, Hemang; Xiao, Wenming et al. (2013) An integrated transcriptome and epigenome analysis identifies a novel candidate gene for pancreatic cancer. BMC Med Genomics 6:33
Marquardt, Jens U; Fischer, Kerstin; Baus, Katharina et al. (2013) Sirtuin-6-dependent genetic and epigenetic alterations are associated with poor clinical outcome in hepatocellular carcinoma patients. Hepatology 58:1054-64
Marquardt, Jens U; Thorgeirsson, Snorri S (2013) Sall4 in ""stemness""-driven hepatocarcinogenesis. N Engl J Med 368:2316-8
Kwon, So Mee; Kim, Dong-Sik; Won, Nam Hee et al. (2013) Genomic copy number alterations with transcriptional deregulation at 6p identify an aggressive HCC phenotype. Carcinogenesis 34:1543-50

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