Structural genomics is a major initiative that will revolutionize our understanding of protein structure and function, By analyzing the vast amount of information generated by the structural genomics consortia, it is possible to look for a correlation between a protein's sequence features and other genomic aspects to a its performance in these standardized experiments, Identifying a general set of protein features and analyzing their effect on a protein's ability to be structurally determined will allow for rapid identification of proteins that are amenable to structural determination, and ultimately, lead to optimization of high-throughput structure determination, Additionally, this set of protein features will be integrated into a general decision tree algorithm that can be used to predict a user-defined protein characteristic, such as solubility. By characterizing the protein properties that determine a protein's propensity to be structurally determined, it is possible to gain valuable information that can be utilized to develop algorithms that can engineer soluble proteins, which can lead to an increase in the amount and speed of protein structures determined.

Agency
National Institute of Health (NIH)
Institute
National Institute of General Medical Sciences (NIGMS)
Type
Postdoctoral Individual National Research Service Award (F32)
Project #
1F32GM069174-01
Application #
6692751
Study Section
Special Emphasis Panel (ZRG1-F04 (20))
Program Officer
Cassatt, James
Project Start
2004-01-01
Project End
2006-12-31
Budget Start
2004-01-01
Budget End
2004-12-31
Support Year
1
Fiscal Year
2003
Total Cost
$39,700
Indirect Cost
Name
Yale University
Department
Biochemistry
Type
Schools of Medicine
DUNS #
043207562
City
New Haven
State
CT
Country
United States
Zip Code
06520