Combinations of H3 tail post-translational modifications can selectively recruit or eject proteins, thus encoding functional consequences for chromatin encoded regulatory functions-transcription, mitosis, DNA damage repair, and others. For example, phosphorylation of H3 S10 and S28 have been demonstrated to "kick off" binding proteins (HP1, and Polycomb Represive Complex component, EED, respectively) of the neighboring methylated lysine abrogating their repressive activities. However, the prevalence and functional relevance of the combination of acetylation and phosphorylation of these same residues and other neighboring histone tail lysines and serines (for example H4 tail S1 and H4K5/K8/K12) is not well understood. Using a combination of quantitative, analytical, and biochemical approaches, we are characterizing the combinations of H3 and H4 tail lysine acetylations and serine phosphorylations and their function. We are pursuing a hypothesis that these combinations feature prominently in both gene activation and chromatin compaction and specify downstream function by recruiting or ejecting chromatin binding factors. For functional evaluation of these chromatin features, we focus on embryonic stem cells where these combinations of modifications are especially abundant and may function in memory of active genes through the cell cycle, and also on macrophages in which these combinatorial motifs are enriched during inflammatory gene induction. In summary, the effects of combinations of proximal histone tail acetylation and phosphorylation on chromatin effector proteins and chromatin state are proposed to be a critical regulatory strategy for chromatin-encoded function.
The identity of cell types-such as neurons, activated white blood cells, or tumor cells-is controlled by variances in how the DNA is packaged into chromatin and regulated. These studies aim to reveal new mechanisms for regulation of chromatin packaging that may reveal how chromatin changes during cellular development, responses to inflammation, and the conversion of normal cells to tumor cells.
|Rothbart, Scott B; Dickson, Bradley M; Raab, Jesse R et al. (2015) An Interactive Database for the Assessment of Histone Antibody Specificity. Mol Cell 59:502-11|
|Josefowicz, Steven Z (2013) Regulators of chromatin state and transcription in CD4 T-cell polarization. Immunology 139:299-308|