The Molecular Systems Pathology Core will provide expert morphological evaluation of normal and tumor samples of human and mouse models to investigators of the Program Project. The Core will further develop novel technology in the areas of morphometry and image analysis of quantitative biomarker multiplexing in tissue sections. This Core is also generating new assays, such as those for analysis of DNA damage using H2AX quantitation at high spectral resolution, for studying senescence at the microanatomical detail, and ex vivo assays using fresh human prostate cancer specimens. Through such approaches, the Core will integrate with all three Projects in pursuing systems pathology approaches to investigate expression of NKX3.I (the major scientific goal of the Core), to study markers of prostate stem cells (Project 1), to examine the expression of direct transcriptional targets of NKX3.1 (Project 2), and to quantify DNA damage response markers in human and mouse prostate tissues (Project 3). We have ample tissue resources to assist all Projects, including a set of 140 human prostate tumors (training set), a second independent cohort of 410 human prostate tumors (validation set), as well as large and well characterized cohorts of human prostate cancer tissues from Memorial Sloan-Kettering Cancer Center (MSKCC) and the Genitourinary Program of the Southwestern Oncology Group (GU-SWOG). This Core also provides assistance in conducting immunohistochemical (IHC) and in situ hybridization (ISH) assays, including interphase fluorescence in situ hybridization (FISH). Using these resources, we will characterize expression patterns of known genes participating in pathways of relevance for the Program, as well as novel genes identified through studies conducted by the proposed projects.
The specific aims are: (1) To investigate the occurrence and correlation of molecular alterations associated with prostate cancer initiation in human preneoplastic and tumor lesions, an aim that includes both technology development and further definition of the temporal map of molecular alterations associated with prostate cancer progression;(2) To examine the expression of NKX3.1 and stem/progenitor markers in androgen-ablated and hormonally-intact human prostate specimens, working with Michael Shen in Project 1;(3) To characterize the expression of NKX3.1 and its transcriptional targets identified in Project 2 using normal and tumor human specimens, working with Cory Abate-Shen;and (4) To further study the relationship of NKX3.I inactivation and the formation of TMPRSS2-ERG fusions, studying pre- and post-treated mice after DNA damage with Edward Gelmann in Project 3.
This Core will promote outstanding translational research on molecular mechanisms of prostate cancer initiation and progression by providing technical support and tissue resources aimed at characterizing genetic aberrations and altered expression of genes involved in such processes. Critical to this Program, and to the scientific community, is the implementation of novel assays through innovative developments in tissue morphometry and quantitative biomarker multiplexing that this Core is also pursuing.
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|Aytes, Alvaro; Mitrofanova, Antonina; Lefebvre, Celine et al. (2014) Cross-species regulatory network analysis identifies a synergistic interaction between FOXM1 and CENPF that drives prostate cancer malignancy. Cancer Cell 25:638-51|
|Wang, Zhu A; Toivanen, Roxanne; Bergren, Sarah K et al. (2014) Luminal cells are favored as the cell of origin for prostate cancer. Cell Rep 8:1339-46|
|Chua, Chee Wai; Shibata, Maho; Lei, Ming et al. (2014) Single luminal epithelial progenitors can generate prostate organoids in culture. Nat Cell Biol 16:951-61, 1-4|
|Bowen, Cai; Ju, Jeong-Ho; Lee, Ji-Hoon et al. (2013) Functional activation of ATM by the prostate cancer suppressor NKX3.1. Cell Rep 4:516-29|
|Irshad, Shazia; Bansal, Mukesh; Castillo-Martin, Mireia et al. (2013) A molecular signature predictive of indolent prostate cancer. Sci Transl Med 5:202ra122|
|Aytes, Alvaro; Mitrofanova, Antonina; Kinkade, Carolyn Waugh et al. (2013) ETV4 promotes metastasis in response to activation of PI3-kinase and Ras signaling in a mouse model of advanced prostate cancer. Proc Natl Acad Sci U S A 110:E3506-15|
|Jin, Feng; Irshad, Shazia; Yu, Wei et al. (2013) ERK and AKT signaling drive MED1 overexpression in prostate cancer in association with elevated proliferation and tumorigenicity. Mol Cancer Res 11:736-47|
|Wang, Zhu A; Mitrofanova, Antonina; Bergren, Sarah K et al. (2013) Lineage analysis of basal epithelial cells reveals their unexpected plasticity and supports a cell-of-origin model for prostate cancer heterogeneity. Nat Cell Biol 15:274-83|
|Shen, Michael M (2013) Chromoplexy: a new category of complex rearrangements in the cancer genome. Cancer Cell 23:567-9|
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