High-end computational services and data management resources are key to sustaining internationally competitive biomedical research. The need for computational infrastructure will become even greater as genomics resources become more sophisticated and ubiquitous (see Genomic Resources Core). This section describes our plan to implement an innovative feedback lifecycle model for providing sustainable computational resources for research program development and customer support services. With NIH investments from previous COBRE awards, we have implemented a state of the art Computational Resources Core (CRC) in the Institute for Bioinformatics and Evolutionary Studies (IBEST) at the University of Idaho. The primary mission of the existing CRC has been to use COBRE funds to develop biomedical research capacity. The CRC currently enables several computationally intensive biomedical research projects, including molecular modeling, statistical simulations, computer algorithm development, and machine learning and data mining.
The aim of this proposed COBRE project is to gradually wean the CRC from COBRE dependence by implementing a business model for fiscal autonomy, without sacrificing flexibility or innovation. The keystone of our plan is to implement a Feedback Lifecycle Model, with two mutually reinforcing pieces: one with purchased equipment for research Program Development and one with leased high-end equipment to support users with independent funding. Our objective is to recruit researchers to develop ideas and preliminary data for future projects on the Program Development system, to perform those projects on the Customer Supported System (leased), and (the key point) to purchase post-lease equipment for the development system while using user fees to maintain the leased systems. COBRE funds will support Program Development operations while we implement the leased system, to improve our data transport hardware and software so that the two systems will be compatible, and to """"""""prime the pump"""""""" by moving the first round of equipment from the fee-for-service system to the development system, after the first round of leases expire.
|Hendricks, Sarah; Epstein, Brendan; Schönfeld, Barbara et al. (2017) Conservation implications of limited genetic diversity and population structure in Tasmanian devils (Sarcophilus harrisii). Conserv Genet 18:977-982|
|Stalder, Thibault; Rogers, Linda M; Renfrow, Chris et al. (2017) Emerging patterns of plasmid-host coevolution that stabilize antibiotic resistance. Sci Rep 7:4853|
|Williams, Janet E; Carrothers, Janae M; Lackey, Kimberly A et al. (2017) Human Milk Microbial Community Structure Is Relatively Stable and Related to Variations in Macronutrient and Micronutrient Intakes in Healthy Lactating Women. J Nutr 147:1739-1748|
|Simmons, Aaron B; Bloomsburg, Samuel J; Sukeena, Joshua M et al. (2017) DSCAM-mediated control of dendritic and axonal arbor outgrowth enforces tiling and inhibits synaptic plasticity. Proc Natl Acad Sci U S A 114:E10224-E10233|
|Ridenhour, Benjamin J; Brooker, Sarah L; Williams, Janet E et al. (2017) Modeling time-series data from microbial communities. ISME J 11:2526-2537|
|Loftie-Eaton, Wesley; Bashford, Kelsie; Quinn, Hannah et al. (2017) Compensatory mutations improve general permissiveness to antibiotic resistance plasmids. Nat Ecol Evol 1:1354-1363|
|Miller, Craig R; Van Leuven, James T; Wichman, Holly A et al. (2017) Selecting among three basic fitness landscape models: Additive, multiplicative and stickbreaking. Theor Popul Biol :|
|Nasioudis, Dimitrios; Forney, Larry J; Schneider, G Maria et al. (2017) Influence of Pregnancy History on the Vaginal Microbiome of Pregnant Women in their First Trimester. Sci Rep 7:10201|
|Shi, Xun; Tarazona, Pablo; Brock, Trisha J et al. (2016) A Caenorhabditis elegans model for ether lipid biosynthesis and function. J Lipid Res 57:265-75|
|Shen, Jian; Song, Ning; Williams, Christopher J et al. (2016) Effects of low dose estrogen therapy on the vaginal microbiomes of women with atrophic vaginitis. Sci Rep 6:24380|
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