The COBRE Proteogenomics and Bioinformatics Core C is a component of the South Carolina COBRE for Cardiovascular Disease (SC COBRE). The mission of this Core is to provide investigators from Medical University of South Carolina (MUSC) and across the region with expert consultation, training, state-of-the-art instrumentation and turnkey services to address questions of gene expression and protein function. The Core builds upon the previous investments of the NIH/NCRR SC COBRE Phase I and II programs, NIH/NCRR SC INBRE program, NIH/NCRR Shared Instrumentation Grants and MUSC, which together have created a comprehensive infrastructure comprised of faculty support staff, instrumentation and computational/statistical analysis resources. To advance our understanding of how gene expression relates to embryonic development and adult disease, the Core has excelled in microarray screening technology. To support this activity, the Core has built a record of accomplishment in data management and analysis and custom development of bioinformatics tools. The Core also provides support for related gene expression methodologies including RNA preparation and quality assessment, real time quantitative PCR analysis, chromatin immunoprecipitation (ChIP) and ChlP-on-Chip for analyzing genomic DNA sequences bound to specific proteins and epigenetic modifications. To advance our genomics capabilities, the Core will implement next generation sequencing in FY2011-12. The Core also provides a variety of protein related services including surface plasmon resonance (SPR) analysis of protein interactions, multiplex bead array-based analysis of phosphoprotein and cytokine levels, and consultation for expression/purification of proteins. Education and outreach are integral components of the mission of the Core. Toward this end, the Core provides a variety of programs for students and faculty that include training in Core technologies, research internships for undergraduates, pilot studies awards to incentivize Core usage, and a seminar series promoting new technology awareness. Collectively, the services of the Proteogenomics and Bioinformatics Core are designed to accelerate the process of discovery and enhance research competitiveness of investigators from MUSC and across the state.

Public Health Relevance

The COBRE MUSC Proteogenomics and Bioinformatics Core is a regional core facility that provides advanced genomic, proteomic and bioinformatic services and educational outreach activities that broadly benefit biomedical research across the state of South Carolina.

Agency
National Institute of Health (NIH)
Institute
National Institute of General Medical Sciences (NIGMS)
Type
Center Core Grants (P30)
Project #
5P30GM103342-03
Application #
8657067
Study Section
Special Emphasis Panel (ZRR1-RI-B)
Project Start
Project End
Budget Start
2014-05-01
Budget End
2015-04-30
Support Year
3
Fiscal Year
2014
Total Cost
$292,149
Indirect Cost
$92,150
Name
Medical University of South Carolina
Department
Type
DUNS #
183710748
City
Charleston
State
SC
Country
United States
Zip Code
29425
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Fresco, Victor M; Kern, Christine B; Mohammadi, Moosa et al. (2016) Fibulin-1 Binds to Fibroblast Growth Factor 8 with High Affinity: EFFECTS ON EMBRYO SURVIVAL. J Biol Chem 291:18730-9
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Arif, Ehtesham; Sharma, Pankaj; Solanki, Ashish et al. (2016) Structural Analysis of the Myo1c and Neph1 Complex Provides Insight into the Intracellular Movement of Neph1. Mol Cell Biol 36:1639-54
Grek, Christina L; Rhett, J Matthew; Bruce, Jaclynn S et al. (2016) Connexin 43, breast cancer tumor suppressor: Missed connections? Cancer Lett 374:117-26
Jia, Jia; Coyle, Robert C; Richards, Dylan J et al. (2016) Development of peptide-functionalized synthetic hydrogel microarrays for stem cell and tissue engineering applications. Acta Biomater 45:110-120
Richards, Dylan; Jia, Jia; Yost, Michael et al. (2016) 3D Bioprinting for Vascularized Tissue Fabrication. Ann Biomed Eng :

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