2. TRD#1: New Approaches to Specimen Preparation Abstract We are developing novel methods for specimen preparation that provide several advantages over traditional methods. These advantages include consumption of very small amounts of sample, and providing for more control over the quality of the prepared grids. The system uses a robotic device, called Spotiton, to dispense drops with volumes on the order of nanoliters to precise locations on an EM grid. The success of the device is coupled to a new ?self-blotting? grid that we have developed to provide a method for spreading sample to a thin film without the use of externally applied filter paper. Over the next 5 years we will design, develop, test and validate a generalized Spotiton system capable of multiple tasks including making well controlled vitrified grids, managing time resolved and fast mixing experiments, and preparing ~100 independent negatively stained samples on a single grid. We anticipate that a version of this device will be manufactured by a commercial company so that it becomes generally available to the research community.

Agency
National Institute of Health (NIH)
Institute
National Institute of General Medical Sciences (NIGMS)
Type
Biotechnology Resource Grants (P41)
Project #
5P41GM103310-18
Application #
9494588
Study Section
Special Emphasis Panel (ZRG1)
Project Start
Project End
Budget Start
2018-04-01
Budget End
2019-03-31
Support Year
18
Fiscal Year
2018
Total Cost
Indirect Cost
Name
New York Structural Biology Center
Department
Type
DUNS #
011191520
City
New York
State
NY
Country
United States
Zip Code
10027
Siegmund, Stephanie E; Grassucci, Robert; Carter, Stephen D et al. (2018) Three-Dimensional Analysis of Mitochondrial Crista Ultrastructure in a Patient with Leigh Syndrome by In Situ Cryoelectron Tomography. iScience 6:83-91
Tan, Yong Zi; Aiyer, Sriram; Mietzsch, Mario et al. (2018) Sub-2?Å Ewald curvature corrected structure of an AAV2 capsid variant. Nat Commun 9:3628
Weick, Eva-Maria; Puno, M Rhyan; Januszyk, Kurt et al. (2018) Helicase-Dependent RNA Decay Illuminated by a Cryo-EM Structure of a Human Nuclear RNA Exosome-MTR4 Complex. Cell 173:1663-1677.e21
Kong, Leopold; Sochacki, Kem A; Wang, Huaibin et al. (2018) Cryo-EM of the dynamin polymer assembled on lipid membrane. Nature 560:258-262
Scapin, Giovanna; Dandey, Venkata P; Zhang, Zhening et al. (2018) Structure of the insulin receptor-insulin complex by single-particle cryo-EM analysis. Nature 556:122-125
Scapin, Giovanna; Potter, Clinton S; Carragher, Bridget (2018) Cryo-EM for Small Molecules Discovery, Design, Understanding, and Application. Cell Chem Biol 25:1318-1325
Pisareva, Vera P; Pisarev, Andrey V; Fernández, Israel S (2018) Dual tRNA mimicry in the Cricket Paralysis Virus IRES uncovers an unexpected similarity with the Hepatitis C Virus IRES. Elife 7:
Malvezzi, Mattia; Andra, Kiran K; Pandey, Kalpana et al. (2018) Out-of-the-groove transport of lipids by TMEM16 and GPCR scramblases. Proc Natl Acad Sci U S A 115:E7033-E7042
Liao, Pin-Chao; Boldogh, Istvan R; Siegmund, Stephanie E et al. (2018) Isolation of mitochondria from Saccharomyces cerevisiae using magnetic bead affinity purification. PLoS One 13:e0196632
Schmidpeter, Philipp A M; Gao, Xiaolong; Uphadyay, Vikrant et al. (2018) Ligand binding and activation properties of the purified bacterial cyclic nucleotide-gated channel SthK. J Gen Physiol 150:821-834

Showing the most recent 10 out of 159 publications