GENOMICS CORE AND HUB OF INNOVATION Mission Research Areas I and III will use massively-parallel sequencing to assay the richness of microbial communities and the response of fish hosts to those communities. The Genomics Core Facility will assist in library preparation and routine analysis of raw data to allow Center members to perform genomic assays quickly and with the highest possible quality.

National Institute of Health (NIH)
National Institute of General Medical Sciences (NIGMS)
Specialized Center (P50)
Project #
Application #
Study Section
Special Emphasis Panel (ZGM1)
Project Start
Project End
Budget Start
Budget End
Support Year
Fiscal Year
Total Cost
Indirect Cost
University of Oregon
United States
Zip Code
Burns, Adam R; Stephens, W Zac; Stagaman, Keaton et al. (2016) Contribution of neutral processes to the assembly of gut microbial communities in the zebrafish over host development. ISME J 10:655-64
Mason, Timothy; Snell, Kathy; Mittge, Erika et al. (2016) Strategies to Mitigate a Mycobacterium marinum Outbreak in a Zebrafish Research Facility. Zebrafish :
Wiles, Travis J; Jemielita, Matthew; Baker, Ryan P et al. (2016) Host Gut Motility Promotes Competitive Exclusion within a Model Intestinal Microbiota. PLoS Biol 14:e1002517
Hill, Jennifer Hampton; Franzosa, Eric A; Huttenhower, Curtis et al. (2016) A conserved bacterial protein induces pancreatic beta cell expansion during zebrafish development. Elife 5:
Milligan-Myhre, Kathryn; Small, Clayton M; Mittge, Erika K et al. (2016) Innate immune responses to gut microbiota differ between oceanic and freshwater threespine stickleback populations. Dis Model Mech 9:187-98
Zac Stephens, W; Burns, Adam R; Stagaman, Keaton et al. (2016) The composition of the zebrafish intestinal microbial community varies across development. ISME J 10:644-54
Preston, Jessica L; Royall, Ariel E; Randel, Melissa A et al. (2016) High-specificity detection of rare alleles with Paired-End Low Error Sequencing (PELE-Seq). BMC Genomics 17:464
Klein, Ann M; Bohannan, Brendan J M; Jaffe, Daniel A et al. (2016) Molecular Evidence for Metabolically Active Bacteria in the Atmosphere. Front Microbiol 7:772
Hammers, Matthew D; Taormina, Michael J; Cerda, Matthew M et al. (2015) A Bright Fluorescent Probe for H2S Enables Analyte-Responsive, 3D Imaging in Live Zebrafish Using Light Sheet Fluorescence Microscopy. J Am Chem Soc 137:10216-23
Stagaman, Keaton; Martinez, Emily S; Guillemin, Karen (2015) Immigrants in immunology: the benefits of lax borders. Trends Immunol 36:286-9

Showing the most recent 10 out of 19 publications