The long-term goal of the proposed project is to understand the molecular mechanisms underlying age- related genomic instability. Genomic rearrangements accumulate in aging tissues leading to dysregulation of global transcription patterns and increase in cancer incidence. Aberrant repair of DNA double-stranded breaks (DSB) by nonhomologous end joining pathway (NHEJ) is responsible for the majority of the genomic rearrangements. NHEJ is the major DSB repair pathway in mammals, which typically leads to small deletions, but may also cause large genome rearrangements. Our preliminary data suggests that NHEJ efficiency and accuracy declines with age and during replicative senescence. Furthermore, we found that SIRT6, a mammalian homolog of yeast longevity gene Sir2, promotes DSB repair under oxidative stress and is able to complement senescence-related decline in repair. Despite the apparent role of NHEJ in aging and cancer age-related changes in NHEJ have not been systematically analyzed in vivo, and the mechanisms leading to age-related dysfunction of NHEJ are poorly understood. In the previous period of support we created a knock-in mouse model for analysis of age-related changes in NHEJ. This is the first mouse model that allows induction of DNA breaks and monitoring the efficiency and fidelity of NHEJ in vivo. This application seeks to utilize this mouse model to analyze age-related changes in NHEJ in different tissues, examine the role of SIRT6 in controlling the function of NHEJ, and test whether life-extending interventions act by stimulating NHEJ. We will pursue the following Specific Aims:
Aim 1 : Examine age-related changes in NHEJ in vivo. Here we will test the hypothesis that NHEJ becomes less efficient and more error-prone during in vivo aging. We will use our newly developed NHEJ reporter mouse to examine the efficiency and fidelity of NHEJ in a panel of tissues in young and aged mice.
Aim 2 : Test the hypothesis that SIRT6 serves as a regulator of DSB repair in response to stress and aging. Our preliminary data show that in cultured cells SIRT6 overexpression greatly stimulates DSB repair under conditions of oxidative stress. Our data also suggest SIRT6 acts on DSB repair by mono-ADP- ribosylating PARP1. Here we aim to expand these observations in an in vivo system using the NHEJ reporter mice and PARP1-/- mice.
Aim 3 : Test whether NHEJ is stimulated by rapamycin treatment or dietary restriction (DR). We hypothesize that decline of NHEJ function contributes to age-related genomic instability and functional decline. Both DR and rapamycin extend mammalian lifespan and have anticancer effect. Furthermore, DR increases SIRT6 levels. We, therefore hypothesize that these interventions stimulate DNA repair by NHEJ. To test this hypothesis we will subject NHEJ reporter mice to DR or rapamycin treatment for 1-8 months, and examine their NHEJ.

Public Health Relevance

Genomes become unstable with age leading to functional decline of organs and tissues and increased incidence of cancer. Our goal is to understand the mechanisms of this instability using a unique mouse model that allows measuring the efficiency of DNA repair in vivo. In the long term, these studies will help develop novel ways to stabilize the aging genome, and prevent cancer.

National Institute of Health (NIH)
National Institute on Aging (NIA)
Research Project (R01)
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Cellular Mechanisms in Aging and Development Study Section (CMAD)
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Guo, Max
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University of Rochester
Schools of Arts and Sciences
United States
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Gorbunova, Vera; Seluanov, Andrei (2016) DNA double strand break repair, aging and the chromatin connection. Mutat Res 788:2-6
Vaidya, Amita; Mao, Zhiyong; Tian, Xiao et al. (2014) Knock-in reporter mice demonstrate that DNA repair by non-homologous end joining declines with age. PLoS Genet 10:e1004511
Hine, Christopher M; Li, Hongjie; Xie, Li et al. (2014) Regulation of Rad51 promoter. Cell Cycle 13:2038-45
Van Meter, Michael; Kashyap, Mehr; Rezazadeh, Sarallah et al. (2014) SIRT6 represses LINE1 retrotransposons by ribosylating KAP1 but this repression fails with stress and age. Nat Commun 5:5011
Cao, Yan; Xu, Yan; Zhang, Lei et al. (2014) Utilization of Rad51C promoter for transcriptional targeting of cancer cells. Oncotarget 5:1805-11
Keane, Michael; Craig, Thomas; Alföldi, Jessica et al. (2014) The Naked Mole Rat Genome Resource: facilitating analyses of cancer and longevity-related adaptations. Bioinformatics 30:3558-60
Ke, Zhonghe; Vaidya, Amita; Ascher, Jill et al. (2014) Novel husbandry techniques support survival of naked mole rat (Heterocephalus glaber) pups. J Am Assoc Lab Anim Sci 53:89-91
Gorbunova, Vera; Boeke, Jef D; Helfand, Stephen L et al. (2014) Human Genomics. Sleeping dogs of the genome. Science 346:1187-8
Yang, Jiang-Nan; Seluanov, Andrei; Gorbunova, Vera (2013) Mitochondrial inverted repeats strongly correlate with lifespan: mtDNA inversions and aging. PLoS One 8:e73318
Yao, Hongwei; Sundar, Isaac K; Gorbunova, Vera et al. (2013) P21-PARP-1 pathway is involved in cigarette smoke-induced lung DNA damage and cellular senescence. PLoS One 8:e80007

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