Hepatitis B Virus (HBV) is an enveloped DNA virus with an RNA intermediate. The core of the virus assembles as a protein shell around a viral mRNA and reverse transcriptase. In the cytoplasm, the encapsidated RNA is transcribed into DNA to yield the mature core. Worldwide, 360 million people suffer from chronic HBV infection. HBV causes liver dysfunction, cirrhosis, and hepatocellular carcinoma. It contributes to almost one million deaths each year. Though HBV can be prevented by vaccination, the vaccine is not therapeutic. Where available, the treatment of choice is monotherapy with a reverse transcriptase inhibitor. Unfortunately, this approach may select for resistant mutants. Ideally, an alternative target can be developed that will yield drugs suitable for combination therapy. We have proposed that HBV core assembly is such a molecular target. Based on theory, we suggest that the most effective approach will be to enhance assembly to tie up many core proteins in unproductive complexes. We have investigated several families of small molecules with assembly enhancing activity, in particular heteroaryldihydro- pyrimidines (HAPs). In the course of our studies we have examined about 150 different potential assembly effectors, developed high throughput screens, determined the HAP binding site crystallographically, and developed solution approaches to evaluate thermodynamic and kinetic responses of viruses to assembly effectors. We observed a strong correlation between assembly kinetics and antiviral effect in cultured cells. Now we propose to capitalize on these results by (i) searching for new assembly effectors, identifying alternative binding sites and lead compounds, and improving on the design of those in hand, (ii) defining the structural and physical chemical basis for assembly effector activity effect, (iii) investigating the ability of the core protein for developing resistance to assembly effectors, and (iv) examining how assembly effectors affect interactions between virus and host by examining how they alter the distribution of HBV cores in cells. These independent aims will move assembly effectors from the subject of purely academic investigation towards clinical application.

Public Health Relevance

Chronic hepatitis B virus infection remains a huge public health problem. We have demonstrated that interfering with assembly of the viral capsid can be an effective antiviral strategy. In this proposal we will develop and test new assembly effectors and determine the mechanism(s) by which they act.

Agency
National Institute of Health (NIH)
Institute
National Institute of Allergy and Infectious Diseases (NIAID)
Type
Research Project (R01)
Project #
5R01AI067417-08
Application #
8263741
Study Section
Special Emphasis Panel (ZRG1-IDM-A (03))
Program Officer
Koshy, Rajen
Project Start
2005-12-06
Project End
2016-05-31
Budget Start
2012-06-01
Budget End
2013-05-31
Support Year
8
Fiscal Year
2012
Total Cost
$480,376
Indirect Cost
$161,391
Name
Indiana University Bloomington
Department
Biochemistry
Type
Schools of Arts and Sciences
DUNS #
006046700
City
Bloomington
State
IN
Country
United States
Zip Code
47401
Wang, Joseph Che-Yen; Nickens, David G; Lentz, Thomas B et al. (2014) Encapsidated hepatitis B virus reverse transcriptase is poised on an ordered RNA lattice. Proc Natl Acad Sci U S A 111:11329-34
Katen, Sarah P; Tan, Zhenning; Chirapu, Srinivas Reddy et al. (2013) Assembly-directed antivirals differentially bind quasiequivalent pockets to modify hepatitis B virus capsid tertiary and quaternary structure. Structure 21:1406-16
Zlotnick, Adam; Tan, Zhenning; Selzer, Lisa (2013) One protein, at least three structures, and many functions. Structure 21:6-8
Li, Lichun; Chirapu, Srinivas Reddy; Finn, M G et al. (2013) Phase diagrams map the properties of antiviral agents directed against hepatitis B virus core assembly. Antimicrob Agents Chemother 57:1505-8
Tan, Zhenning; Maguire, Megan L; Loeb, Daniel D et al. (2013) Genetically altering the thermodynamics and kinetics of hepatitis B virus capsid assembly has profound effects on virus replication in cell culture. J Virol 87:3208-16
Zlotnick, Adam; Mukhopadhyay, Suchetana (2011) Virus assembly, allostery and antivirals. Trends Microbiol 19:14-23
Lau, Jolene L; Baksh, Michael M; Fiedler, Jason D et al. (2011) Evolution and protein packaging of small-molecule RNA aptamers. ACS Nano 5:7722-9
Katen, Sarah P; Chirapu, Srinivas Reddy; Finn, M G et al. (2010) Trapping of hepatitis B virus capsid assembly intermediates by phenylpropenamide assembly accelerators. ACS Chem Biol 5:1125-36
Katen, Sarah; Zlotnick, Adam (2009) The thermodynamics of virus capsid assembly. Methods Enzymol 455:395-417
Bourne, Christina R; Katen, Sarah P; Fulz, Matthew R et al. (2009) A mutant hepatitis B virus core protein mimics inhibitors of icosahedral capsid self-assembly. Biochemistry 48:1736-42

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